schrodinger package¶
This is the top level package for all Schrodinger modules.
The main modules of interest are schrodinger.structure
and the ones in
the schrodinger.structutils
package.
The Python Module Overview included with the Schrodinger distribution gives an expository introduction to the Schrodinger Python API. It is available at https://www.schrodinger.com/pythonapi.
If you have questions about the API, please contact us at https://www.schrodinger.com/supportcenter.
- schrodinger.version_at_least(v)¶
Check that the Schrodinger python version is at least the value ‘v’. NOTE: Deprecated in favor of get_mmshare_version()
- schrodinger.version_at_most(v)¶
Check that the Schrodinger python version does not exceed ‘v’. NOTE: Deprecated in favor of get_mmshare_version()
- schrodinger.version_compatible(minimum, maximum)¶
Check that the version is between minimum and maximum values. NOTE: Deprecated in favor of get_mmshare_version()
If the current Schrodinger python version is less than the minimum, an Exception will be raised. If the current version is greater than the maximum, a warning will be issued.
- schrodinger.get_release_name() str ¶
Return descriptive text name of the current release.
- schrodinger.get_bumped_release_version(current_version: str, bump_val: int = 1) str ¶
Get the bumped up/down version of release
- Parameters
version – The current release version in “year-quarter” format. Both 2023-1 and 23-1 are allowed.
bump_val – The increment to the version
- Returns
The bumped version as a string
- Raises
ValueError – If the release version has incorrect format
Return the mmshare version as a 5 digit integer.
- schrodinger.get_maestro()¶
Get either schrodinger.maestro.maestro or an object that allows scripts to avoid running maestro dependent-code, and print reasonable errors if that code is run outside of maestro.
- Returns
schrodinger.maestro.maestro or DummyMaestroModule
- schrodinger.get_mpl_backend_name() str ¶
Get the matplotlib backend name to use with for drawing plots.
- class schrodinger.py38StrEnum(value, names=None, *, module=None, qualname=None, type=None, start=1, boundary=None)¶
Bases:
str
,enum.Enum
An enum class where all values are strings. All enum objects stringify to their value. NOTE: This works only for < py 3.11.
- class schrodinger.StrEnum(value, names=None, *, module=None, qualname=None, type=None, start=1, boundary=None)¶
Bases:
enum.StrEnum
Subpackages¶
- schrodinger.active_learning package
- Submodules
- schrodinger.active_learning.al_driver module
- schrodinger.active_learning.al_node module
- schrodinger.active_learning.al_report module
- schrodinger.active_learning.al_utils module
- schrodinger.active_learning.fake_nodes module
- schrodinger.active_learning.mq_backend module
- schrodinger.active_learning.mq_driver module
- schrodinger.active_learning.mq_worker module
- schrodinger.active_learning.scaffold_methods module
- Submodules
- schrodinger.analysis package
- Subpackages
- schrodinger.analysis.enrichment package
- schrodinger.analysis.visanalysis package
- Introduction
- Submodules
- schrodinger.analysis.visanalysis.vdaxis module
- schrodinger.analysis.visanalysis.vdcoordinateframe module
- schrodinger.analysis.visanalysis.vdexception module
- schrodinger.analysis.visanalysis.volumedata module
- schrodinger.analysis.visanalysis.volumedataio module
- schrodinger.analysis.visanalysis.volumedatastructureutils module
- schrodinger.analysis.visanalysis.volumedatautils module
- Submodules
- Subpackages
- schrodinger.application package
- Subpackages
- schrodinger.application.aacg package
- schrodinger.application.bb_database namespace
- schrodinger.application.bindingsite package
- schrodinger.application.bioluminate package
- Subpackages
- schrodinger.application.bioluminate.actions package
- schrodinger.application.bioluminate.anarci namespace
- schrodinger.application.bioluminate.antibody package
- Subpackages
- Submodules
- schrodinger.application.bioluminate.antibody.annotate module
- schrodinger.application.bioluminate.antibody.annotation_constants module
- schrodinger.application.bioluminate.antibody.antibody_homology_report_writer module
- schrodinger.application.bioluminate.antibody.antibody_modeling_yaml module
- schrodinger.application.bioluminate.antibody.assembly module
- schrodinger.application.bioluminate.antibody.assembly_yaml module
- schrodinger.application.bioluminate.antibody.grafting module
- schrodinger.application.bioluminate.antibody.management module
- schrodinger.application.bioluminate.antibody.models module
- schrodinger.application.bioluminate.antibody.scaffold_search module
- schrodinger.application.bioluminate.antibody.search_results_table module
- schrodinger.application.bioluminate.antibody.sequence_indexer module
- schrodinger.application.bioluminate.antibody.test_immunebuilder_adapter module
- schrodinger.application.bioluminate.antibody.utils module
- schrodinger.application.bioluminate.drivers package
- schrodinger.application.bioluminate.epitope namespace
- schrodinger.application.bioluminate.immunebuilder namespace
- schrodinger.application.bioluminate.met_oxidation package
- schrodinger.application.bioluminate.mhc namespace
- schrodinger.application.bioluminate.nucleic package
- schrodinger.application.bioluminate.patch_utils package
- schrodinger.application.bioluminate.peptide_sar namespace
- Submodules
- schrodinger.application.bioluminate.peptide_sar.encode module
- schrodinger.application.bioluminate.peptide_sar.io module
- schrodinger.application.bioluminate.peptide_sar.label module
- schrodinger.application.bioluminate.peptide_sar.sar module
- schrodinger.application.bioluminate.peptide_sar.statistics module
- Submodules
- schrodinger.application.bioluminate.pose_filtering package
- Submodules
- schrodinger.application.bioluminate.pose_filtering.csv_filter module
- schrodinger.application.bioluminate.pose_filtering.hdx_analysis module
- schrodinger.application.bioluminate.pose_filtering.hdx_calc module
- schrodinger.application.bioluminate.pose_filtering.hdx_io module
- schrodinger.application.bioluminate.pose_filtering.operators module
- schrodinger.application.bioluminate.pose_filtering.residue_filter module
- schrodinger.application.bioluminate.pose_filtering.test module
- Submodules
- schrodinger.application.bioluminate.protein package
- schrodinger.application.bioluminate.protein_interaction package
- schrodinger.application.bioluminate.residue_scanning package
- schrodinger.application.bioluminate.ssv package
- schrodinger.application.bioluminate.tcr namespace
- schrodinger.application.bioluminate.update_germline_db namespace
- Submodules
- schrodinger.application.bioluminate.bwidgets module
- schrodinger.application.bioluminate.classify module
- schrodinger.application.bioluminate.escomp module
- schrodinger.application.bioluminate.interaction_calculator module
- schrodinger.application.bioluminate.methionine_oxidation module
- schrodinger.application.bioluminate.mutation module
- schrodinger.application.bioluminate.pml_menus module
- schrodinger.application.bioluminate.propfilter module
- schrodinger.application.bioluminate.propfilter_ui module
- schrodinger.application.bioluminate.propka_parse module
- schrodinger.application.bioluminate.protein_protein_docking_shared module
- schrodinger.application.bioluminate.protein_report_widget module
- schrodinger.application.bioluminate.protein_structure_quality module
- schrodinger.application.bioluminate.protein_structure_quality_ui module
- schrodinger.application.bioluminate.reactive_residues module
- schrodinger.application.bioluminate.run_propka module
- schrodinger.application.bioluminate.sliderchart module
- schrodinger.application.bioluminate.surfcomp module
- schrodinger.application.bioluminate.validate_imported_modules module
- schrodinger.application.bioluminate.workspacelabeler module
- Subpackages
- schrodinger.application.canvas package
- Submodules
- schrodinger.application.canvas.base module
- schrodinger.application.canvas.cluster module
- schrodinger.application.canvas.clustergui module
- schrodinger.application.canvas.fingerprint module
- schrodinger.application.canvas.fingerprintgui module
- schrodinger.application.canvas.r_group module
- schrodinger.application.canvas.r_group_dee module
- schrodinger.application.canvas.similarity module
- schrodinger.application.canvas.similaritygui module
- schrodinger.application.canvas.topo_descriptors module
- schrodinger.application.canvas.utils module
- Submodules
- schrodinger.application.combiglide package
- schrodinger.application.combinatorial_diversity package
- Submodules
- schrodinger.application.combinatorial_diversity.diversity_fingerprinter module
- schrodinger.application.combinatorial_diversity.diversity_selector module
- schrodinger.application.combinatorial_diversity.diversity_splitter module
- schrodinger.application.combinatorial_diversity.driver_utils module
- schrodinger.application.combinatorial_diversity.splitter_utils module
- Submodules
- schrodinger.application.combinatorial_explorer package
- schrodinger.application.combinatorial_screen package
- schrodinger.application.dendrogram namespace
- Submodules
- schrodinger.application.dendrogram.chemicalDendrogram module
- schrodinger.application.dendrogram.core_class module
- schrodinger.application.dendrogram.dendroMain module
- schrodinger.application.dendrogram.gradientSelector module
- schrodinger.application.dendrogram.proteinDendrogram module
- schrodinger.application.dendrogram.randTestSet module
- Submodules
- schrodinger.application.desmond namespace
- Subpackages
- Submodules
- schrodinger.application.desmond.arkdb module
- schrodinger.application.desmond.bennett module
- schrodinger.application.desmond.cms module
- schrodinger.application.desmond.cms_utils module
- schrodinger.application.desmond.cns_io module
- schrodinger.application.desmond.measurement module
- schrodinger.application.desmond.remd module
- schrodinger.application.desmond.struc module
- schrodinger.application.desmond.system_builder_util module
- schrodinger.application.desmond.torsion_related module
- schrodinger.application.desmond.util module
- schrodinger.application.epik package
- schrodinger.application.fragment_virtual_screening namespace
- schrodinger.application.glide package
- Subpackages
- Submodules
- schrodinger.application.glide.client_module module
- schrodinger.application.glide.ensemble_selection module
- schrodinger.application.glide.glide module
- schrodinger.application.glide.glideanalysis module
- schrodinger.application.glide.gui module
- schrodinger.application.glide.http_client module
- schrodinger.application.glide.http_server module
- schrodinger.application.glide.ligand_designer module
- schrodinger.application.glide.phase_subset module
- schrodinger.application.glide.poseviewconvert module
- schrodinger.application.glide.property_names module
- schrodinger.application.glide.sort_parser_common module
- schrodinger.application.glide.sort_utils module
- schrodinger.application.glide.utils module
- schrodinger.application.glide.xpdes module
- schrodinger.application.jaguar package
- Subpackages
- schrodinger.application.jaguar.distributed_frequencies package
- schrodinger.application.jaguar.gui package
- Subpackages
- schrodinger.application.jaguar.gui.tabs package
- Subpackages
- schrodinger.application.jaguar.gui.tabs.input_sub_tabs package
- schrodinger.application.jaguar.gui.tabs.per_atom_basis_pop_up package
- schrodinger.application.jaguar.gui.tabs.sub_tab_widgets package
- Submodules
- schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.base_widgets module
- schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.basis_set_widgets module
- schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.charge_constraints_widgets module
- schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.charge_selector module
- Submodules
- Submodules
- schrodinger.application.jaguar.gui.tabs.base_tab module
- schrodinger.application.jaguar.gui.tabs.coordinates module
- schrodinger.application.jaguar.gui.tabs.input_tab module
- schrodinger.application.jaguar.gui.tabs.irc_tab module
- schrodinger.application.jaguar.gui.tabs.molecule_tab module
- schrodinger.application.jaguar.gui.tabs.multi_structure_tab module
- schrodinger.application.jaguar.gui.tabs.optimization_tab module
- schrodinger.application.jaguar.gui.tabs.output_tab module
- schrodinger.application.jaguar.gui.tabs.properties_tab module
- schrodinger.application.jaguar.gui.tabs.reaction_molecules_tab module
- schrodinger.application.jaguar.gui.tabs.reaction_properties_tab module
- schrodinger.application.jaguar.gui.tabs.reaction_tab module
- schrodinger.application.jaguar.gui.tabs.scan_tab module
- schrodinger.application.jaguar.gui.tabs.scf_tab module
- schrodinger.application.jaguar.gui.tabs.solvation_tab module
- schrodinger.application.jaguar.gui.tabs.theory_tab module
- schrodinger.application.jaguar.gui.tabs.transition_state_tab module
- Subpackages
- schrodinger.application.jaguar.gui.ui package
- Subpackages
- Submodules
- schrodinger.application.jaguar.gui.ui.config_dialog_jaguar_ui module
- schrodinger.application.jaguar.gui.ui.coordinate_dialog_ui module
- schrodinger.application.jaguar.gui.ui.define_smarts_panel_ui module
- schrodinger.application.jaguar.gui.ui.edit_dialog_ui module
- schrodinger.application.jaguar.gui.ui.excited_state_widget_ui module
- schrodinger.application.jaguar.gui.ui.input_hb_bottom_ui module
- schrodinger.application.jaguar.gui.ui.input_hb_top_ui module
- schrodinger.application.jaguar.gui.ui.input_pka_bottom_ui module
- schrodinger.application.jaguar.gui.ui.input_pka_top_ui module
- schrodinger.application.jaguar.gui.ui.input_std_bottom_ui module
- schrodinger.application.jaguar.gui.ui.input_top_ui module
- schrodinger.application.jaguar.gui.ui.irc_bottom_ui module
- schrodinger.application.jaguar.gui.ui.irc_top_ui module
- schrodinger.application.jaguar.gui.ui.molecule_pka_bottom_ui module
- schrodinger.application.jaguar.gui.ui.molecule_std_bottom_ui module
- schrodinger.application.jaguar.gui.ui.molecule_top_ui module
- schrodinger.application.jaguar.gui.ui.multi_structures_ui module
- schrodinger.application.jaguar.gui.ui.optimization_tab_ui module
- schrodinger.application.jaguar.gui.ui.output_tab_ui module
- schrodinger.application.jaguar.gui.ui.pka_smarts_page_ui module
- schrodinger.application.jaguar.gui.ui.properties_tab_ui module
- schrodinger.application.jaguar.gui.ui.reaction_molecules_tab_ui module
- schrodinger.application.jaguar.gui.ui.reaction_properties_tab_ui module
- schrodinger.application.jaguar.gui.ui.reaction_tab_ui module
- schrodinger.application.jaguar.gui.ui.scan_tab_nextgeom_ui module
- schrodinger.application.jaguar.gui.ui.scan_tab_ui module
- schrodinger.application.jaguar.gui.ui.scf_tab_ui module
- schrodinger.application.jaguar.gui.ui.solvent_pka_tab_ui module
- schrodinger.application.jaguar.gui.ui.solvent_tab_ui module
- schrodinger.application.jaguar.gui.ui.spin_treatment_widget_ui module
- schrodinger.application.jaguar.gui.ui.theory_tab_ui module
- schrodinger.application.jaguar.gui.ui.transition_state_bottom_ui module
- schrodinger.application.jaguar.gui.ui.transition_state_top_ui module
- schrodinger.application.jaguar.gui.tabs package
- Submodules
- schrodinger.application.jaguar.gui.base_panel module
- schrodinger.application.jaguar.gui.basis_selector module
- schrodinger.application.jaguar.gui.edit_dialog module
- schrodinger.application.jaguar.gui.filedialog module
- schrodinger.application.jaguar.gui.input_tab_widgets module
- schrodinger.application.jaguar.gui.input_tab_widgets_hb module
- schrodinger.application.jaguar.gui.input_tab_widgets_pka module
- schrodinger.application.jaguar.gui.solvent_selector module
- schrodinger.application.jaguar.gui.theory_selector module
- schrodinger.application.jaguar.gui.theory_tab_widgets module
- schrodinger.application.jaguar.gui.timing module
- schrodinger.application.jaguar.gui.utils module
- Subpackages
- schrodinger.application.jaguar.qrnn package
- Submodules
- schrodinger.application.jaguar.autots_bonding module
- schrodinger.application.jaguar.autots_constants module
- schrodinger.application.jaguar.autots_exceptions module
- schrodinger.application.jaguar.autots_input module
- schrodinger.application.jaguar.autots_input_constants module
- schrodinger.application.jaguar.autots_keywords module
- schrodinger.application.jaguar.autots_rmsd module
- schrodinger.application.jaguar.autots_validation module
- schrodinger.application.jaguar.basis module
- schrodinger.application.jaguar.check_headers module
- schrodinger.application.jaguar.constants module
- schrodinger.application.jaguar.csrch_input_constants module
- schrodinger.application.jaguar.discretized_1d_function module
- schrodinger.application.jaguar.esol_constants module
- schrodinger.application.jaguar.esol_input module
- schrodinger.application.jaguar.esol_keywords module
- schrodinger.application.jaguar.esol_validation module
- schrodinger.application.jaguar.exceptions module
- schrodinger.application.jaguar.file_logger module
- schrodinger.application.jaguar.global_macros module
- schrodinger.application.jaguar.hess_guess module
- schrodinger.application.jaguar.hydrokinetic_constants module
- schrodinger.application.jaguar.hydrokinetic_input module
- schrodinger.application.jaguar.hydrokinetic_input_constants module
- schrodinger.application.jaguar.hydrokinetic_keywords module
- schrodinger.application.jaguar.hydrokinetic_validation module
- schrodinger.application.jaguar.input module
- schrodinger.application.jaguar.jagconvert module
- schrodinger.application.jaguar.jaguar_config_dialog module
- schrodinger.application.jaguar.jaguar_diff module
- schrodinger.application.jaguar.jaguar_keyword_utils module
- schrodinger.application.jaguar.jaguar_tasks module
- schrodinger.application.jaguar.keywordDB module
- schrodinger.application.jaguar.kinetics module
- schrodinger.application.jaguar.macro_pka_constants module
- schrodinger.application.jaguar.macro_pka_input module
- schrodinger.application.jaguar.macro_pka_keywords module
- schrodinger.application.jaguar.macro_pka_utils module
- schrodinger.application.jaguar.macro_pka_validation module
- schrodinger.application.jaguar.make_headers module
- schrodinger.application.jaguar.mmjag module
- schrodinger.application.jaguar.neural_network_optimizer module
- schrodinger.application.jaguar.nmr_basis module
- schrodinger.application.jaguar.nmr_interactions module
- schrodinger.application.jaguar.nmr_utils module
- schrodinger.application.jaguar.output module
- schrodinger.application.jaguar.permutation_symmetry module
- schrodinger.application.jaguar.pk50_report module
- schrodinger.application.jaguar.results module
- schrodinger.application.jaguar.rotation_barriers_input module
- schrodinger.application.jaguar.rotation_barriers_keywords module
- schrodinger.application.jaguar.rotation_barriers_validation module
- schrodinger.application.jaguar.scan module
- schrodinger.application.jaguar.simple_spec module
- schrodinger.application.jaguar.solvation_input module
- schrodinger.application.jaguar.solvation_keywords module
- schrodinger.application.jaguar.solvation_validation module
- schrodinger.application.jaguar.spectroscopy_defaults module
- schrodinger.application.jaguar.spin_simulator_v2 module
- schrodinger.application.jaguar.textparser module
- schrodinger.application.jaguar.update_pka_settings module
- schrodinger.application.jaguar.update_pka_settings_ui module
- schrodinger.application.jaguar.user_config module
- schrodinger.application.jaguar.utils module
- schrodinger.application.jaguar.validation module
- schrodinger.application.jaguar.workflow_input module
- schrodinger.application.jaguar.workflow_keywords module
- schrodinger.application.jaguar.workflow_validation module
- Subpackages
- schrodinger.application.job_monitor package
- Submodules
- schrodinger.application.job_monitor.buttons module
- schrodinger.application.job_monitor.diagnostics_dialog_ui module
- schrodinger.application.job_monitor.file_browser_ui module
- schrodinger.application.job_monitor.job_info_view_ui module
- schrodinger.application.job_monitor.job_monitor_diagnostics_dialog module
- schrodinger.application.job_monitor.job_monitor_file_browser module
- schrodinger.application.job_monitor.job_monitor_gui module
- schrodinger.application.job_monitor.job_monitor_icons_rc module
- schrodinger.application.job_monitor.job_monitor_models module
- schrodinger.application.job_monitor.job_monitor_progress_bar module
- schrodinger.application.job_monitor.job_monitor_stylesheets module
- schrodinger.application.job_monitor.job_monitor_table module
- schrodinger.application.job_monitor.job_monitor_widgets module
- schrodinger.application.job_monitor.top_level_view_ui module
- schrodinger.application.job_monitor.util module
- Submodules
- schrodinger.application.jobserver_cert_gui_dir namespace
- schrodinger.application.licensing package
- Subpackages
- schrodinger.application.licensing.licserver package
- Submodules
- schrodinger.application.licensing.licserver.client module
- schrodinger.application.licensing.licserver.exceptions module
- schrodinger.application.licensing.licserver.install module
- schrodinger.application.licensing.licserver.main module
- schrodinger.application.licensing.licserver.quick_slm_setup module
- schrodinger.application.licensing.licserver.server module
- Submodules
- schrodinger.application.licensing.licserver package
- Submodules
- Subpackages
- schrodinger.application.ligprep package
- schrodinger.application.livedesign package
- Submodules
- schrodinger.application.livedesign.constants module
- schrodinger.application.livedesign.cubes module
- schrodinger.application.livedesign.data_classes module
- schrodinger.application.livedesign.entry_types module
- schrodinger.application.livedesign.export_map_manager module
- schrodinger.application.livedesign.export_models module
- schrodinger.application.livedesign.export_setup_ui module
- schrodinger.application.livedesign.export_tasks module
- schrodinger.application.livedesign.export_ui module
- schrodinger.application.livedesign.icons_rc module
- schrodinger.application.livedesign.import_utils module
- schrodinger.application.livedesign.invalid_ge_id_warning_ui module
- schrodinger.application.livedesign.io_utils module
- schrodinger.application.livedesign.ld_base_classes module
- schrodinger.application.livedesign.ld_connection_checker module
- schrodinger.application.livedesign.ld_export module
- schrodinger.application.livedesign.ld_export_gui module
- schrodinger.application.livedesign.ld_folder_tree module
- schrodinger.application.livedesign.ld_glide_utils module
- schrodinger.application.livedesign.ld_import module
- schrodinger.application.livedesign.ld_import_utils module
- schrodinger.application.livedesign.ld_ligand_strain_utils module
- schrodinger.application.livedesign.ld_maestro_actions module
- schrodinger.application.livedesign.ld_maestro_actions_constants module
- schrodinger.application.livedesign.ld_mmgbsa_utils module
- schrodinger.application.livedesign.ld_model_input module
- schrodinger.application.livedesign.ld_settings module
- schrodinger.application.livedesign.ld_strain_rescore_utils module
- schrodinger.application.livedesign.ld_tasks module
- schrodinger.application.livedesign.ld_utils module
- schrodinger.application.livedesign.ldclient_proxy module
- schrodinger.application.livedesign.lid module
- schrodinger.application.livedesign.live_report_widget module
- schrodinger.application.livedesign.live_report_widget_ui module
- schrodinger.application.livedesign.login module
- schrodinger.application.livedesign.login2_ui module
- schrodinger.application.livedesign.login_gui module
- schrodinger.application.livedesign.login_gui2 module
- schrodinger.application.livedesign.login_ui module
- schrodinger.application.livedesign.maestro_ld_connection module
- schrodinger.application.livedesign.maestro_ld_mapping_ui module
- schrodinger.application.livedesign.maestro_sync module
- schrodinger.application.livedesign.mapping_widgets module
- schrodinger.application.livedesign.mappings_manager_ui module
- schrodinger.application.livedesign.panel_components module
- schrodinger.application.livedesign.pose_name_panel module
- schrodinger.application.livedesign.pose_name_panel_ui module
- schrodinger.application.livedesign.pse_helpers module
- schrodinger.application.livedesign.save_mapping_dialog_ui module
- schrodinger.application.livedesign.selection_pop_up_ui module
- schrodinger.application.livedesign.summary module
- schrodinger.application.livedesign.summary_ui module
- schrodinger.application.livedesign.tasks module
- schrodinger.application.livedesign.two_d_render module
- schrodinger.application.livedesign.upload_utils module
- schrodinger.application.livedesign.widgets module
- Submodules
- schrodinger.application.macromodel package
- schrodinger.application.matsci package
- Subpackages
- schrodinger.application.matsci.cctbx package
- schrodinger.application.matsci.elasticity package
- schrodinger.application.matsci.espresso package
- schrodinger.application.matsci.gsas package
- Submodules
- schrodinger.application.matsci.gsas.ElementTable module
- schrodinger.application.matsci.gsas.GSASIIElem module
- schrodinger.application.matsci.gsas.GSASIIfiles module
- schrodinger.application.matsci.gsas.GSASIIlattice module
- schrodinger.application.matsci.gsas.GSASIImath module
- schrodinger.application.matsci.gsas.GSASIIpwd module
- schrodinger.application.matsci.gsas.GSASIIspc module
- schrodinger.application.matsci.gsas.atmdata module
- Submodules
- schrodinger.application.matsci.mlearn package
- Subpackages
- schrodinger.application.matsci.mlearn.sklearn_json package
- Submodules
- schrodinger.application.matsci.mlearn.sklearn_json.classification module
- schrodinger.application.matsci.mlearn.sklearn_json.common module
- schrodinger.application.matsci.mlearn.sklearn_json.csr module
- schrodinger.application.matsci.mlearn.sklearn_json.decomposition module
- schrodinger.application.matsci.mlearn.sklearn_json.regression module
- Submodules
- schrodinger.application.matsci.mlearn.sklearn_json package
- Submodules
- Subpackages
- schrodinger.application.matsci.nano package
- Submodules
- schrodinger.application.matsci.nano.check module
- schrodinger.application.matsci.nano.constants module
- schrodinger.application.matsci.nano.interface_mod module
- schrodinger.application.matsci.nano.particle module
- schrodinger.application.matsci.nano.plane module
- schrodinger.application.matsci.nano.sheet module
- schrodinger.application.matsci.nano.slab module
- schrodinger.application.matsci.nano.space_groups module
- schrodinger.application.matsci.nano.surfaces_interfaces_mod module
- schrodinger.application.matsci.nano.tools module
- schrodinger.application.matsci.nano.tube module
- schrodinger.application.matsci.nano.util module
- schrodinger.application.matsci.nano.xtal module
- Submodules
- schrodinger.application.matsci.siteselector package
- Submodules
- schrodinger.application.matsci.amorphous module
- schrodinger.application.matsci.anharmonic module
- schrodinger.application.matsci.appbase module
- schrodinger.application.matsci.aseutils module
- schrodinger.application.matsci.atom_group module
- schrodinger.application.matsci.atomicsymbols module
- schrodinger.application.matsci.atomicsymbolsgui module
- schrodinger.application.matsci.automated_cg_mapping module
- schrodinger.application.matsci.automated_martini_mapping_protein module
- schrodinger.application.matsci.bandshape_utils module
- schrodinger.application.matsci.basiselements module
- schrodinger.application.matsci.boltzmann_avg_props module
- schrodinger.application.matsci.buildcomplex module
- schrodinger.application.matsci.buildcomplex2d module
- schrodinger.application.matsci.builderwidgets module
- schrodinger.application.matsci.cache module
- schrodinger.application.matsci.cg_mapping module
- schrodinger.application.matsci.cgforcefield module
- schrodinger.application.matsci.cgforcefieldgui module
- schrodinger.application.matsci.chargegui module
- schrodinger.application.matsci.clusterstruct module
- schrodinger.application.matsci.clusterstructgui module
- schrodinger.application.matsci.coarsegrain module
- schrodinger.application.matsci.codeutils module
- schrodinger.application.matsci.colorutils module
- schrodinger.application.matsci.configdlgs module
- schrodinger.application.matsci.controlicons_rc module
- schrodinger.application.matsci.crest module
- schrodinger.application.matsci.density_analysis module
- schrodinger.application.matsci.density_analysis_widget module
- schrodinger.application.matsci.desconfig module
- schrodinger.application.matsci.desmondutils module
- schrodinger.application.matsci.deswidgets module
- schrodinger.application.matsci.elementalprops module
- schrodinger.application.matsci.enc module
- schrodinger.application.matsci.enumeration module
- schrodinger.application.matsci.equilibrium_md module
- schrodinger.application.matsci.etarotamers module
- schrodinger.application.matsci.etatoggle module
- schrodinger.application.matsci.fragments module
- schrodinger.application.matsci.freevolume module
- schrodinger.application.matsci.genetic_optimization module
- schrodinger.application.matsci.geometry module
- schrodinger.application.matsci.graph module
- schrodinger.application.matsci.gutils module
- schrodinger.application.matsci.hdfutils module
- schrodinger.application.matsci.jaguar_multistage_workflow_utils module
- schrodinger.application.matsci.jaguar_restart module
- schrodinger.application.matsci.jaguarworkflows module
- schrodinger.application.matsci.jagwidgets module
- schrodinger.application.matsci.jobdirdlg module
- schrodinger.application.matsci.jobutils module
- schrodinger.application.matsci.jwsteps module
- schrodinger.application.matsci.kmc module
- schrodinger.application.matsci.kmcgui module
- schrodinger.application.matsci.maestrocmds module
- schrodinger.application.matsci.mecp_mod module
- schrodinger.application.matsci.ml_formulations_gui_utils module
- schrodinger.application.matsci.montecarlo module
- schrodinger.application.matsci.msconst module
- schrodinger.application.matsci.msminimize module
- schrodinger.application.matsci.msprops module
- schrodinger.application.matsci.mstest module
- schrodinger.application.matsci.msutils module
- schrodinger.application.matsci.mswidgets module
- schrodinger.application.matsci.multiapp module
- schrodinger.application.matsci.optoelectronics module
- schrodinger.application.matsci.order_parameter_mod module
- schrodinger.application.matsci.packmol module
- schrodinger.application.matsci.parserutils module
- schrodinger.application.matsci.pbcutils module
- schrodinger.application.matsci.permittivity module
- schrodinger.application.matsci.plotwidgets module
- schrodinger.application.matsci.pmgutils module
- schrodinger.application.matsci.polymer module
- schrodinger.application.matsci.qualityslider module
- schrodinger.application.matsci.qubec_utils module
- schrodinger.application.matsci.rdpattern module
- schrodinger.application.matsci.rdpattern_gui module
- schrodinger.application.matsci.reaction_workflow_enum_utils module
- schrodinger.application.matsci.reaction_workflow_gui_utils module
- schrodinger.application.matsci.reaction_workflow_utils module
- schrodinger.application.matsci.reorder module
- schrodinger.application.matsci.reordergui module
- schrodinger.application.matsci.reportutils module
- schrodinger.application.matsci.rxn_channel module
- schrodinger.application.matsci.rxn_path module
- schrodinger.application.matsci.sculptcomplex module
- schrodinger.application.matsci.shapes module
- schrodinger.application.matsci.sliceplot module
- schrodinger.application.matsci.smartsutils module
- schrodinger.application.matsci.smartsutilsgui module
- schrodinger.application.matsci.species module
- schrodinger.application.matsci.speciesgui module
- schrodinger.application.matsci.spectra module
- schrodinger.application.matsci.stage_widgets module
- schrodinger.application.matsci.stress_strain module
- schrodinger.application.matsci.swap_fragments_utils module
- schrodinger.application.matsci.textlogger module
- schrodinger.application.matsci.typography module
- schrodinger.application.matsci.uq_utils module
- schrodinger.application.matsci.wfmanagement module
- schrodinger.application.matsci.xrd module
- schrodinger.application.matsci.yamlutils module
- schrodinger.application.matsci.zmutils module
- Subpackages
- schrodinger.application.medchem package
- schrodinger.application.mopac package
- Submodules
- schrodinger.application.mopac.exceptions module
- schrodinger.application.mopac.mopac_backend module
- schrodinger.application.mopac.mopac_launchers module
- schrodinger.application.mopac.mopac_parser module
- schrodinger.application.mopac.mopac_startup module
- schrodinger.application.mopac.mopac_surfaces module
- schrodinger.application.mopac.results_main module
- schrodinger.application.mopac.structure_launchers module
- schrodinger.application.mopac.utils module
- Submodules
- schrodinger.application.pathfinder package
- Submodules
- schrodinger.application.pathfinder.aligner module
- schrodinger.application.pathfinder.analysis module
- schrodinger.application.pathfinder.multiroute module
- schrodinger.application.pathfinder.reaction module
- schrodinger.application.pathfinder.render module
- schrodinger.application.pathfinder.route module
- schrodinger.application.pathfinder.synthesis module
- Submodules
- schrodinger.application.phase package
- Subpackages
- schrodinger.application.phase.packages package
- Subpackages
- schrodinger.application.phase.packages.hypo_refine namespace
- Submodules
- schrodinger.application.phase.packages.hypo_refine.hypo_utils module
- schrodinger.application.phase.packages.hypo_refine.job_utils module
- schrodinger.application.phase.packages.hypo_refine.option_utils module
- schrodinger.application.phase.packages.hypo_refine.project_utils module
- schrodinger.application.phase.packages.hypo_refine.screen_utils module
- Submodules
- schrodinger.application.phase.packages.hypo_refine namespace
- Submodules
- schrodinger.application.phase.packages.align_ligands_driver_options module
- schrodinger.application.phase.packages.bedroc_screener module
- schrodinger.application.phase.packages.cat_hypo_converter module
- schrodinger.application.phase.packages.conformer_reader module
- schrodinger.application.phase.packages.conformer_storage module
- schrodinger.application.phase.packages.ligand_aligner module
- schrodinger.application.phase.packages.mmp2d module
- schrodinger.application.phase.packages.mmp3d_driver_utils module
- schrodinger.application.phase.packages.mmp3dscreener module
- schrodinger.application.phase.packages.mmp_compare_utils module
- schrodinger.application.phase.packages.oned_app_utils module
- schrodinger.application.phase.packages.oned_option_utils module
- schrodinger.application.phase.packages.oned_task_utils module
- schrodinger.application.phase.packages.phase_convert_MOE module
- schrodinger.application.phase.packages.phase_database_arg_utils module
- schrodinger.application.phase.packages.phase_database_job_utils module
- schrodinger.application.phase.packages.phase_option_utils module
- schrodinger.application.phase.packages.phase_screen_driver_utils module
- schrodinger.application.phase.packages.phase_screen_utils module
- schrodinger.application.phase.packages.phase_utils module
- schrodinger.application.phase.packages.shape_binary_utils module
- schrodinger.application.phase.packages.shape_creation_logic module
- schrodinger.application.phase.packages.shape_diversity module
- schrodinger.application.phase.packages.shape_generator module
- schrodinger.application.phase.packages.shape_ligprep module
- schrodinger.application.phase.packages.shape_screen_al_driver module
- schrodinger.application.phase.packages.shape_screen_al_node module
- schrodinger.application.phase.packages.shape_screen_al_utils module
- schrodinger.application.phase.packages.shape_screen_arg_utils module
- schrodinger.application.phase.packages.shape_screen_gpu_generate module
- schrodinger.application.phase.packages.shape_screen_gpu_update module
- schrodinger.application.phase.packages.shape_screen_job_utils module
- schrodinger.application.phase.packages.shape_screen_oned_driver_utils module
- schrodinger.application.phase.packages.test module
- Subpackages
- schrodinger.application.phase.shape_screen_reporter package
- schrodinger.application.phase.packages package
- Submodules
- schrodinger.application.phase.compare_utils module
- schrodinger.application.phase.constants module
- schrodinger.application.phase.create_xvol module
- schrodinger.application.phase.featureselector module
- schrodinger.application.phase.hypothesis module
- schrodinger.application.phase.hypothesis_binding_modes module
- schrodinger.application.phase.input module
- schrodinger.application.phase.license module
- schrodinger.application.phase.phase_markers module
- schrodinger.application.phase.phase_widgets module
- schrodinger.application.phase.pt_hypothesis module
- schrodinger.application.phase.utils module
- Subpackages
- schrodinger.application.prepwizard2 package
- schrodinger.application.prime package
- schrodinger.application.pymol package
- Subpackages
- Submodules
- schrodinger.application.pymol.constants module
- schrodinger.application.pymol.export_handler module
- schrodinger.application.pymol.export_to_pymol_gui module
- schrodinger.application.pymol.gui_models module
- schrodinger.application.pymol.mae_sync module
- schrodinger.application.pymol.pymol4maestro module
- schrodinger.application.pymol.pymol4maestro_ui module
- schrodinger.application.pymol.utils module
- schrodinger.application.qsite package
- schrodinger.application.scaffold_enumeration package
- Submodules
- schrodinger.application.scaffold_enumeration.atomlist module
- schrodinger.application.scaffold_enumeration.common module
- schrodinger.application.scaffold_enumeration.cxsmiles module
- schrodinger.application.scaffold_enumeration.layered module
- schrodinger.application.scaffold_enumeration.linknode module
- schrodinger.application.scaffold_enumeration.markush module
- schrodinger.application.scaffold_enumeration.mdl module
- schrodinger.application.scaffold_enumeration.posvarbond module
- schrodinger.application.scaffold_enumeration.rdcml module
- Submodules
- schrodinger.application.steps package
- Submodules
- schrodinger.application.steps.basesteps module
- schrodinger.application.steps.converters module
- schrodinger.application.steps.dataclasses module
- schrodinger.application.steps.docking module
- schrodinger.application.steps.enumerators module
- schrodinger.application.steps.env_keys module
- schrodinger.application.steps.filters module
- schrodinger.application.steps.licensing module
- schrodinger.application.steps.ligprep module
- schrodinger.application.steps.scorers module
- schrodinger.application.steps.test module
- schrodinger.application.steps.transformers module
- schrodinger.application.steps.utils module
- Submodules
- schrodinger.application.transforms package
- Subpackages
- Submodules
- schrodinger.application.transforms.chem module
- schrodinger.application.transforms.chemio module
- schrodinger.application.transforms.dock module
- schrodinger.application.transforms.dofn_utils module
- schrodinger.application.transforms.enumerators module
- schrodinger.application.transforms.filters module
- schrodinger.application.transforms.ligprep module
- schrodinger.application.transforms.test module
- schrodinger.application.transforms.validators module
- schrodinger.application.vss package
- schrodinger.application.watermap package
- schrodinger.application.xtb package
- Submodules
- schrodinger.application.xtb.constants module
- schrodinger.application.xtb.input module
- schrodinger.application.xtb.keywords module
- schrodinger.application.xtb.output module
- schrodinger.application.xtb.runner module
- schrodinger.application.xtb.textparser module
- schrodinger.application.xtb.utilities module
- Submodules
- Submodules
- Subpackages
- schrodinger.cloud namespace
- schrodinger.comparison package
- Submodules
- schrodinger.comparison.atom_mapper module
- schrodinger.comparison.chirality module
- schrodinger.comparison.comparison module
- schrodinger.comparison.constants module
- schrodinger.comparison.exceptions module
- schrodinger.comparison.neighbors module
- schrodinger.comparison.results module
- schrodinger.comparison.struc module
- Submodules
- schrodinger.driver namespace
- schrodinger.forcefield package
- schrodinger.graphics3d package
- Submodules
- schrodinger.graphics3d.arrow module
- schrodinger.graphics3d.box module
- schrodinger.graphics3d.common module
- schrodinger.graphics3d.ellipsoid module
- schrodinger.graphics3d.gridbox module
- schrodinger.graphics3d.hemisphere module
- schrodinger.graphics3d.lines module
- schrodinger.graphics3d.polygon module
- schrodinger.graphics3d.polyhedron module
- schrodinger.graphics3d.sphere module
- schrodinger.graphics3d.torus module
- schrodinger.graphics3d.tube module
- Submodules
- schrodinger.infra package
- Subpackages
- Submodules
- schrodinger.infra.ark module
- schrodinger.infra.epydoc_to_sphinx module
- schrodinger.infra.exception_handler module
- schrodinger.infra.fast3d module
- schrodinger.infra.fix_sip6_enum_access module
- schrodinger.infra.gpgpu_utils module
- schrodinger.infra.growthspace module
- schrodinger.infra.jobhub module
- schrodinger.infra.licensing module
- schrodinger.infra.ligand_parameters module
- schrodinger.infra.mm module
- schrodinger.infra.mmbitset module
- schrodinger.infra.mmcheck module
- schrodinger.infra.mmerr module
- schrodinger.infra.mmim module
- schrodinger.infra.mminit module
- schrodinger.infra.mmjob module
- schrodinger.infra.mmkv module
- schrodinger.infra.mmlist module
- schrodinger.infra.mmobject module
- schrodinger.infra.mmproj module
- schrodinger.infra.mmreflect module
- schrodinger.infra.mmsurf module
- schrodinger.infra.phase module
- schrodinger.infra.projectmodel module
- schrodinger.infra.qt_message_handler module
- schrodinger.infra.structure module
- schrodinger.infra.table module
- schrodinger.infra.test module
- schrodinger.infra.unusable_module_importer module
- schrodinger.infra.util module
- schrodinger.job package
- Submodules
- schrodinger.job.cert module
- schrodinger.job.download module
- schrodinger.job.driver_decorator module
- schrodinger.job.files module
- schrodinger.job.host_check module
- schrodinger.job.hunt_stub module
- schrodinger.job.jobcontrol module
- schrodinger.job.jobhandler module
- schrodinger.job.jobwriter module
- schrodinger.job.launchapi module
- schrodinger.job.launcher module
- schrodinger.job.launchparams module
- schrodinger.job.queue module
- schrodinger.job.remote_command module
- schrodinger.job.resource module
- schrodinger.job.server module
- schrodinger.job.util module
- Submodules
- schrodinger.livedesign namespace
- Subpackages
- Submodules
- schrodinger.livedesign.bbchem_endpoints module
- schrodinger.livedesign.check_reaction module
- schrodinger.livedesign.cmdline module
- schrodinger.livedesign.convert module
- schrodinger.livedesign.draw module
- schrodinger.livedesign.entity_type module
- schrodinger.livedesign.model_io module
- schrodinger.livedesign.preprocessor module
- schrodinger.livedesign.pymol_image module
- schrodinger.livedesign.registration module
- schrodinger.livedesign.rgfile_parse module
- schrodinger.livedesign.rgroup_decomposition module
- schrodinger.livedesign.run_reaction module
- schrodinger.livedesign.search module
- schrodinger.livedesign.setup_reaction module
- schrodinger.maestro package
- schrodinger.maestro_utils package
- schrodinger.math namespace
- schrodinger.models package
- Subpackages
- Submodules
- schrodinger.models.advanced_mappers module
- schrodinger.models.diffy module
- schrodinger.models.json module
- schrodinger.models.jsonable module
- schrodinger.models.mappers module
- schrodinger.models.param_class_convertors module
- schrodinger.models.paramable module
- schrodinger.models.parameters module
- schrodinger.models.paramtools module
- schrodinger.models.presets module
- schrodinger.models.yaml_utils module
- schrodinger.pipeline package
- Subpackages
- schrodinger.pipeline.stages package
- Submodules
- schrodinger.pipeline.stages.canvas module
- schrodinger.pipeline.stages.combine module
- schrodinger.pipeline.stages.convert module
- schrodinger.pipeline.stages.example module
- schrodinger.pipeline.stages.filtering module
- schrodinger.pipeline.stages.gencodes module
- schrodinger.pipeline.stages.glide module
- schrodinger.pipeline.stages.ligprep module
- schrodinger.pipeline.stages.macromodel module
- schrodinger.pipeline.stages.phase module
- schrodinger.pipeline.stages.prime module
- schrodinger.pipeline.stages.pull module
- schrodinger.pipeline.stages.qikprop module
- schrodinger.pipeline.stages.qsite module
- schrodinger.pipeline.stages.rmsd module
- schrodinger.pipeline.stages.semiemp module
- Submodules
- schrodinger.pipeline.stages package
- Submodules
- Subpackages
- schrodinger.project package
- schrodinger.protein package
- Subpackages
- schrodinger.protein.gpcr package
- schrodinger.protein.helm package
- schrodinger.protein.protassign namespace
- Submodules
- schrodinger.protein.protassign.changeables module
- schrodinger.protein.protassign.constants module
- schrodinger.protein.protassign.hbond_cluster module
- schrodinger.protein.protassign.network_solver module
- schrodinger.protein.protassign.pka_prediction module
- schrodinger.protein.protassign.unsatisfied_donors module
- schrodinger.protein.protassign.utils module
- Submodules
- schrodinger.protein.tasks namespace
- Submodules
- schrodinger.protein.tasks.binding_site_align module
- schrodinger.protein.tasks.blast module
- schrodinger.protein.tasks.clustal module
- schrodinger.protein.tasks.descriptors module
- schrodinger.protein.tasks.hit_align module
- schrodinger.protein.tasks.kinase module
- schrodinger.protein.tasks.mock_blast_output module
- schrodinger.protein.tasks.muscle module
- schrodinger.protein.tasks.optimize_alignment module
- schrodinger.protein.tasks.pfam module
- schrodinger.protein.tasks.sta module
- schrodinger.protein.tasks.structure_alignment module
- Submodules
- Submodules
- schrodinger.protein.align module
- schrodinger.protein.alignment module
- schrodinger.protein.analysis module
- schrodinger.protein.analysis_params module
- schrodinger.protein.annotation module
- schrodinger.protein.assignment module
- schrodinger.protein.biounit module
- schrodinger.protein.buildpeptide module
- schrodinger.protein.captermini module
- schrodinger.protein.constants module
- schrodinger.protein.findhets module
- schrodinger.protein.getpdb module
- schrodinger.protein.getpdb_utility module
- schrodinger.protein.helix module
- schrodinger.protein.membrane module
- schrodinger.protein.natural_analog module
- schrodinger.protein.nonstandard_residues module
- schrodinger.protein.pdbname module
- schrodinger.protein.predictors module
- schrodinger.protein.process_enamine_db module
- schrodinger.protein.properties module
- schrodinger.protein.reliability module
- schrodinger.protein.remediate module
- schrodinger.protein.renumber_residues module
- schrodinger.protein.residue module
- schrodinger.protein.rotamers module
- schrodinger.protein.seqres module
- schrodinger.protein.sequence module
- Subpackages
- schrodinger.rdkit namespace
- Submodules
- schrodinger.rdkit.alignment module
- schrodinger.rdkit.coarsegrain module
- schrodinger.rdkit.filtering module
- schrodinger.rdkit.mesomerizer module
- schrodinger.rdkit.molio module
- schrodinger.rdkit.rdkit_adapter module
- schrodinger.rdkit.rgroup module
- schrodinger.rdkit.sorted_molwriter module
- schrodinger.rdkit.substructure module
- Submodules
- schrodinger.seam package
- schrodinger.stepper package
- schrodinger.structure module
- schrodinger.structutils package
- Subpackages
- schrodinger.structutils.interactions package
- Examples
- Submodules
- schrodinger.structutils.interactions.hbond module
- schrodinger.structutils.interactions.pi module
- schrodinger.structutils.interactions.protein_protein_interactions module
- schrodinger.structutils.interactions.salt_bridge module
- schrodinger.structutils.interactions.ssbond module
- schrodinger.structutils.interactions.steric_clash module
- schrodinger.structutils.interactions package
- Submodules
- schrodinger.structutils.analyze module
- schrodinger.structutils.assignbondorders module
- schrodinger.structutils.block_data module
- schrodinger.structutils.build module
- schrodinger.structutils.ccd module
- schrodinger.structutils.check module
- schrodinger.structutils.clash_resolution module
- schrodinger.structutils.color module
- schrodinger.structutils.createfragments module
- schrodinger.structutils.filter module
- schrodinger.structutils.interactionfp module
- schrodinger.structutils.io module
- schrodinger.structutils.measure module
- schrodinger.structutils.minimize module
- schrodinger.structutils.pbc_tools module
- schrodinger.structutils.residue module
- schrodinger.structutils.rgroup_enumerate module
- schrodinger.structutils.rings module
- schrodinger.structutils.ringspear module
- schrodinger.structutils.rmsd module
- schrodinger.structutils.shuffle module
- schrodinger.structutils.sitealign module
- schrodinger.structutils.smiles module
- schrodinger.structutils.smilesfilter module
- schrodinger.structutils.sort module
- schrodinger.structutils.standard_nuclear_orientation module
- schrodinger.structutils.structalign module
- schrodinger.structutils.structalign2 module
- schrodinger.structutils.transform module
- Subpackages
- schrodinger.tasks package
- Submodules
- schrodinger.tasks.cmdline module
- schrodinger.tasks.drivers module
- schrodinger.tasks.gui module
- schrodinger.tasks.hosts module
- schrodinger.tasks.jobtasks module
- schrodinger.tasks.ldtasks module
- schrodinger.tasks.queue module
- schrodinger.tasks.remote_modules module
- schrodinger.tasks.taskmanager module
- schrodinger.tasks.tasks module
- schrodinger.tasks.taskszmq module
- Submodules
- schrodinger.thirdparty namespace
- schrodinger.trajectory package
- Subpackages
- schrodinger.trajectory.prody package
- Submodules
- schrodinger.trajectory.prody.compare module
- schrodinger.trajectory.prody.crosscorrelation module
- schrodinger.trajectory.prody.ensemble module
- schrodinger.trajectory.prody.mode module
- schrodinger.trajectory.prody.modeset module
- schrodinger.trajectory.prody.nma module
- schrodinger.trajectory.prody.pca module
- schrodinger.trajectory.prody.test_arrow module
- schrodinger.trajectory.prody.writenmd module
- Submodules
- schrodinger.trajectory.trajectory_gui_dir namespace
- Submodules
- schrodinger.trajectory.trajectory_gui_dir.advanced_plot_ui module
- schrodinger.trajectory.trajectory_gui_dir.advanced_settings module
- schrodinger.trajectory.trajectory_gui_dir.advanced_settings_ui module
- schrodinger.trajectory.trajectory_gui_dir.banners module
- schrodinger.trajectory.trajectory_gui_dir.centroid_banner_ui module
- schrodinger.trajectory.trajectory_gui_dir.collapsible_plot_ui module
- schrodinger.trajectory.trajectory_gui_dir.conf_wheel_plot_panel_ui module
- schrodinger.trajectory.trajectory_gui_dir.conformation_wheel_plots module
- schrodinger.trajectory.trajectory_gui_dir.custom_analyzers module
- schrodinger.trajectory.trajectory_gui_dir.custom_asl_sets_dialog_ui module
- schrodinger.trajectory.trajectory_gui_dir.custom_substructure_sets_dialog_ui module
- schrodinger.trajectory.trajectory_gui_dir.display_settings_data module
- schrodinger.trajectory.trajectory_gui_dir.display_settings_manager module
- schrodinger.trajectory.trajectory_gui_dir.energy_plot_ui module
- schrodinger.trajectory.trajectory_gui_dir.energy_plots module
- schrodinger.trajectory.trajectory_gui_dir.export_movie module
- schrodinger.trajectory.trajectory_gui_dir.export_movie_ui module
- schrodinger.trajectory.trajectory_gui_dir.export_snapshot_structures module
- schrodinger.trajectory.trajectory_gui_dir.export_snapshot_structures_ui module
- schrodinger.trajectory.trajectory_gui_dir.export_structure_enums module
- schrodinger.trajectory.trajectory_gui_dir.export_structures module
- schrodinger.trajectory.trajectory_gui_dir.export_structures_ui module
- schrodinger.trajectory.trajectory_gui_dir.frame_structure_exporter module
- schrodinger.trajectory.trajectory_gui_dir.icons_rc module
- schrodinger.trajectory.trajectory_gui_dir.interaction_plots module
- schrodinger.trajectory.trajectory_gui_dir.job_settings_dialog_ui module
- schrodinger.trajectory.trajectory_gui_dir.planar_banner_ui module
- schrodinger.trajectory.trajectory_gui_dir.playback_settings module
- schrodinger.trajectory.trajectory_gui_dir.playback_settings_data module
- schrodinger.trajectory.trajectory_gui_dir.playback_settings_ui module
- schrodinger.trajectory.trajectory_gui_dir.playertoolbar module
- schrodinger.trajectory.trajectory_gui_dir.plots module
- schrodinger.trajectory.trajectory_gui_dir.rama_plot_panel_ui module
- schrodinger.trajectory.trajectory_gui_dir.ramachandran_plots module
- schrodinger.trajectory.trajectory_gui_dir.rdf_plot_ui module
- schrodinger.trajectory.trajectory_gui_dir.rdf_plots module
- schrodinger.trajectory.trajectory_gui_dir.rmsd_plots module
- schrodinger.trajectory.trajectory_gui_dir.rmsd_settings_dialog_ui module
- schrodinger.trajectory.trajectory_gui_dir.secondary_structure_data module
- schrodinger.trajectory.trajectory_gui_dir.shortcut_ui module
- schrodinger.trajectory.trajectory_gui_dir.snapshot_custom_display_settings module
- schrodinger.trajectory.trajectory_gui_dir.snapshot_custom_display_settings_ui module
- schrodinger.trajectory.trajectory_gui_dir.snapshot_panel module
- schrodinger.trajectory.trajectory_gui_dir.snapshot_panel_ui module
- schrodinger.trajectory.trajectory_gui_dir.stylesheet module
- schrodinger.trajectory.trajectory_gui_dir.traj_plot_gui module
- schrodinger.trajectory.trajectory_gui_dir.traj_plot_models module
- schrodinger.trajectory.trajectory_gui_dir.traj_plot_ui module
- schrodinger.trajectory.trajectory_gui_dir.traj_plot_widgets module
- schrodinger.trajectory.trajectory_gui_dir.trajectory_messages module
- Submodules
- schrodinger.trajectory.prody package
- Submodules
- Subpackages
- schrodinger.ui package
- Subpackages
- schrodinger.ui.picking_dir package
- schrodinger.ui.qt package
- Subpackages
- schrodinger.ui.qt.appframework2 package
- Submodules
- schrodinger.ui.qt.appframework2.af2 module
- schrodinger.ui.qt.appframework2.af2_template module
- schrodinger.ui.qt.appframework2.application module
- schrodinger.ui.qt.appframework2.appmethods module
- schrodinger.ui.qt.appframework2.baseapp module
- schrodinger.ui.qt.appframework2.debug module
- schrodinger.ui.qt.appframework2.debug_gui module
- schrodinger.ui.qt.appframework2.debug_gui_ui module
- schrodinger.ui.qt.appframework2.debugcore module
- schrodinger.ui.qt.appframework2.debugwidgets module
- schrodinger.ui.qt.appframework2.jobnames module
- schrodinger.ui.qt.appframework2.jobs module
- schrodinger.ui.qt.appframework2.knime_af2 module
- schrodinger.ui.qt.appframework2.maestro_callback module
- schrodinger.ui.qt.appframework2.markers module
- schrodinger.ui.qt.appframework2.settings module
- schrodinger.ui.qt.appframework2.validation module
- schrodinger.ui.qt.appframework2.validators module
- schrodinger.ui.qt.appframework2.wizards module
- Submodules
- schrodinger.ui.qt.dialbox_dir package
- schrodinger.ui.qt.filter_dialog_dir package
- schrodinger.ui.qt.forcefield package
- Submodules
- schrodinger.ui.qt.forcefield.ffcustomoplssettingwidget module
- schrodinger.ui.qt.forcefield.ffcustomoplssettingwidget_ui module
- schrodinger.ui.qt.forcefield.ffglobalpreferencewidget module
- schrodinger.ui.qt.forcefield.ffglobalpreferencewidget_ui module
- schrodinger.ui.qt.forcefield.ffprojectsettingsdlg module
- schrodinger.ui.qt.forcefield.ffprojectsettingsdlg_ui module
- schrodinger.ui.qt.forcefield.ffselector module
- schrodinger.ui.qt.forcefield.ffsettingsbutton module
- schrodinger.ui.qt.forcefield.forcefield module
- schrodinger.ui.qt.forcefield.pathselectorwidget module
- schrodinger.ui.qt.forcefield.stylesheet module
- Submodules
- schrodinger.ui.qt.mapperwidgets package
- schrodinger.ui.qt.presets namespace
- schrodinger.ui.qt.standard package
- schrodinger.ui.qt.standard_widgets namespace
- Submodules
- schrodinger.ui.qt.standard_widgets.buttons module
- schrodinger.ui.qt.standard_widgets.combo_boxes module
- schrodinger.ui.qt.standard_widgets.flat_button module
- schrodinger.ui.qt.standard_widgets.hyperlink module
- schrodinger.ui.qt.standard_widgets.labels module
- schrodinger.ui.qt.standard_widgets.sketcher_text_widget module
- schrodinger.ui.qt.standard_widgets.sketcher_text_widget_ui module
- schrodinger.ui.qt.standard_widgets.standard_widgets_rc module
- schrodinger.ui.qt.standard_widgets.statusbar module
- Submodules
- schrodinger.ui.qt.tasks package
- Submodules
- schrodinger.ui.qt.tasks.config_dialog_ui module
- schrodinger.ui.qt.tasks.config_info_ui module
- schrodinger.ui.qt.tasks.configwidgets module
- schrodinger.ui.qt.tasks.taskbar2 module
- schrodinger.ui.qt.tasks.taskbar_ui module
- schrodinger.ui.qt.tasks.taskbarwidgets module
- schrodinger.ui.qt.tasks.taskwidgets module
- Submodules
- schrodinger.ui.qt.widgetmixins package
- schrodinger.ui.qt.appframework2 package
- Submodules
- schrodinger.ui.qt.appframework module
- schrodinger.ui.qt.atom_weights_table_ui module
- schrodinger.ui.qt.atom_weights_table_widget module
- schrodinger.ui.qt.atomselector module
- schrodinger.ui.qt.basewidgets module
- schrodinger.ui.qt.borderless_popup_ui module
- schrodinger.ui.qt.color_picker module
- schrodinger.ui.qt.config_dialog module
- schrodinger.ui.qt.config_dialog_open_mp_ui module
- schrodinger.ui.qt.config_dialog_queue_ui module
- schrodinger.ui.qt.datamapper module
- schrodinger.ui.qt.decorators module
- schrodinger.ui.qt.delegates module
- schrodinger.ui.qt.dendrogram module
- schrodinger.ui.qt.dialbox module
- schrodinger.ui.qt.directory_selector module
- schrodinger.ui.qt.entryselector module
- schrodinger.ui.qt.entryselector_ui module
- schrodinger.ui.qt.figureoptions module
- schrodinger.ui.qt.file_selector module
- schrodinger.ui.qt.filedialog module
- schrodinger.ui.qt.filter_dialog module
- schrodinger.ui.qt.filter_dialog_ui module
- schrodinger.ui.qt.filter_list module
- schrodinger.ui.qt.formlayout module
- schrodinger.ui.qt.fp_selector_widget module
- schrodinger.ui.qt.fp_selector_widget_ui module
- schrodinger.ui.qt.icons module
- schrodinger.ui.qt.icons_rc module
- schrodinger.ui.qt.input_selector module
- schrodinger.ui.qt.jobwidgets module
- schrodinger.ui.qt.label module
- schrodinger.ui.qt.label_cursor module
- schrodinger.ui.qt.layout module
- schrodinger.ui.qt.ligand_list module
- schrodinger.ui.qt.matplot_widget module
- schrodinger.ui.qt.messagebox module
- schrodinger.ui.qt.multi_combo_box module
- schrodinger.ui.qt.navtoolbar module
- schrodinger.ui.qt.network_views module
- schrodinger.ui.qt.network_visualizer module
- schrodinger.ui.qt.pdb_dialog module
- schrodinger.ui.qt.pdb_dialog_ui module
- schrodinger.ui.qt.periodictable module
- schrodinger.ui.qt.pop_up_widgets module
- schrodinger.ui.qt.propertyselector module
- schrodinger.ui.qt.protein_health_viewer module
- schrodinger.ui.qt.protein_health_viewer_ui module
- schrodinger.ui.qt.radial_plot module
- schrodinger.ui.qt.rama module
- schrodinger.ui.qt.rdmol_views module
- schrodinger.ui.qt.recent_completer module
- schrodinger.ui.qt.rename_favorite_dialog module
- schrodinger.ui.qt.rename_favorite_dialog_ui module
- schrodinger.ui.qt.schart module
- schrodinger.ui.qt.schrodinger_ipython module
- schrodinger.ui.qt.schrodingerstyle module
- schrodinger.ui.qt.select_residues_dialog module
- schrodinger.ui.qt.select_residues_dialog_ui module
- schrodinger.ui.qt.smatplotlib module
- schrodinger.ui.qt.structtable module
- schrodinger.ui.qt.structure2d module
- schrodinger.ui.qt.structure_selector module
- schrodinger.ui.qt.style module
- schrodinger.ui.qt.stylesheet module
- schrodinger.ui.qt.swidgets module
- schrodinger.ui.qt.table module
- schrodinger.ui.qt.table_helper module
- schrodinger.ui.qt.table_speed_up module
- schrodinger.ui.qt.tablewidget module
- schrodinger.ui.qt.tooltips module
- schrodinger.ui.qt.utils module
- schrodinger.ui.qt.xsignals module
- Subpackages
- Submodules
- schrodinger.ui.chooseligand module
- schrodinger.ui.dendrogram module
- schrodinger.ui.images_rc module
- schrodinger.ui.ipython_structure module
- schrodinger.ui.ligfilter module
- schrodinger.ui.ligfilter_definition_dialog_ui module
- schrodinger.ui.ligfilter_ui module
- schrodinger.ui.maestro_ui module
- schrodinger.ui.picking module
- schrodinger.ui.residueselector module
- schrodinger.ui.sketcher module
- schrodinger.ui.sketcher_extensions module
- schrodinger.ui.sketcher_image module
- schrodinger.ui.sketcher_smarts_dialog module
- schrodinger.ui.sketcher_smarts_dialog_ui module
- schrodinger.ui.two_d_viewer module
- schrodinger.ui.two_d_viewer_ui module
- Subpackages
- schrodinger.utils package
- Subpackages
- Submodules
- schrodinger.utils.cgxutils module
- schrodinger.utils.cmdline module
- schrodinger.utils.colorscheme module
- schrodinger.utils.compare module
- schrodinger.utils.csv_unicode module
- schrodinger.utils.deprecation module
- schrodinger.utils.documentation module
- schrodinger.utils.env module
- schrodinger.utils.fileutils module
- schrodinger.utils.funcchains module
- schrodinger.utils.funcgroups module
- schrodinger.utils.imputils module
- schrodinger.utils.install_scripts module
- schrodinger.utils.installation_check module
- schrodinger.utils.license module
- schrodinger.utils.ligfilter module
- schrodinger.utils.log module
- schrodinger.utils.machid module
- schrodinger.utils.maestro_scripts_path module
- schrodinger.utils.mmutil module
- schrodinger.utils.moduleproxy module
- schrodinger.utils.multifpfile module
- schrodinger.utils.net module
- schrodinger.utils.openmpi module
- schrodinger.utils.platform module
- schrodinger.utils.postinstall module
- schrodinger.utils.preferences module
- schrodinger.utils.profiling module
- schrodinger.utils.pymol module
- schrodinger.utils.qapplication module
- schrodinger.utils.qt_utils module
- schrodinger.utils.scollections module
- schrodinger.utils.singledashoptionparser module
- schrodinger.utils.sshconfig module
- schrodinger.utils.subproc module
- schrodinger.utils.subprocess module
- schrodinger.utils.sysinfo module
- schrodinger.utils.thread_utils module
- schrodinger.utils.typing module
- schrodinger.utils.units module
- schrodinger.utils.withnone module