schrodinger.application package¶
A package for application specific modules.
- desmond:
A package containing modules for the Desmond project
- epik:
A package exposing the Epik functionality.
- glide:
A package for creating Glide grid generation and docking jobs
- inputconfig:
Module for writing and reading simplified input files
- jaguar:
A package for creating Jaguar QM related tasks
- ligprep:
A package containing LigPrep-related modules.
- macromodel:
A package for creating and running MacroModel and Cluster jobs.
- mcpro:
A package containing modules for the MCPRO+ product
- phase:
A package containing Phase-related modules.
- prepwizard:
Module that is used by PrepWizard
- pymol:
Module that contains functions for running PyMOL
- report2d:
Module that is used by 2D Viewer and generate_2d_report to produce PDF and HTML files with 2D structure images.
- ska:
Module for running SKA backend (protein structure alignment)
- vsw:
A package containing the VSW modules and stages
- watermap:
Module with WaterMap-related functions.
Subpackages¶
- schrodinger.application.aacg package
- schrodinger.application.bb_database namespace
- schrodinger.application.bindingsite package
- schrodinger.application.bioluminate package
- Subpackages
- schrodinger.application.bioluminate.actions package
- schrodinger.application.bioluminate.anarci namespace
- schrodinger.application.bioluminate.antibody package
- Subpackages
- Submodules
- schrodinger.application.bioluminate.antibody.annotate module
- schrodinger.application.bioluminate.antibody.annotation_constants module
- schrodinger.application.bioluminate.antibody.antibody_homology_report_writer module
- schrodinger.application.bioluminate.antibody.antibody_modeling_yaml module
- schrodinger.application.bioluminate.antibody.assembly module
- schrodinger.application.bioluminate.antibody.assembly_yaml module
- schrodinger.application.bioluminate.antibody.grafting module
- schrodinger.application.bioluminate.antibody.management module
- schrodinger.application.bioluminate.antibody.models module
- schrodinger.application.bioluminate.antibody.scaffold_search module
- schrodinger.application.bioluminate.antibody.search_results_table module
- schrodinger.application.bioluminate.antibody.sequence_indexer module
- schrodinger.application.bioluminate.antibody.test_immunebuilder_adapter module
- schrodinger.application.bioluminate.antibody.utils module
- schrodinger.application.bioluminate.drivers package
- schrodinger.application.bioluminate.epitope namespace
- schrodinger.application.bioluminate.immunebuilder namespace
- schrodinger.application.bioluminate.met_oxidation package
- schrodinger.application.bioluminate.mhc namespace
- schrodinger.application.bioluminate.nucleic package
- schrodinger.application.bioluminate.patch_utils package
- schrodinger.application.bioluminate.peptide_sar namespace
- Submodules
- schrodinger.application.bioluminate.peptide_sar.encode module
- schrodinger.application.bioluminate.peptide_sar.io module
- schrodinger.application.bioluminate.peptide_sar.label module
- schrodinger.application.bioluminate.peptide_sar.sar module
- schrodinger.application.bioluminate.peptide_sar.statistics module
- Submodules
- schrodinger.application.bioluminate.pose_filtering package
- Submodules
- schrodinger.application.bioluminate.pose_filtering.csv_filter module
- schrodinger.application.bioluminate.pose_filtering.hdx_analysis module
- schrodinger.application.bioluminate.pose_filtering.hdx_calc module
- schrodinger.application.bioluminate.pose_filtering.hdx_io module
- schrodinger.application.bioluminate.pose_filtering.operators module
- schrodinger.application.bioluminate.pose_filtering.residue_filter module
- schrodinger.application.bioluminate.pose_filtering.test module
- Submodules
- schrodinger.application.bioluminate.protein package
- schrodinger.application.bioluminate.protein_interaction package
- schrodinger.application.bioluminate.residue_scanning package
- schrodinger.application.bioluminate.ssv package
- schrodinger.application.bioluminate.tcr namespace
- schrodinger.application.bioluminate.update_germline_db namespace
- Submodules
- schrodinger.application.bioluminate.bwidgets module
- schrodinger.application.bioluminate.classify module
- schrodinger.application.bioluminate.escomp module
- schrodinger.application.bioluminate.interaction_calculator module
- schrodinger.application.bioluminate.methionine_oxidation module
- schrodinger.application.bioluminate.mutation module
- schrodinger.application.bioluminate.pml_menus module
- schrodinger.application.bioluminate.propfilter module
- schrodinger.application.bioluminate.propfilter_ui module
- schrodinger.application.bioluminate.propka_parse module
- schrodinger.application.bioluminate.protein_protein_docking_shared module
- schrodinger.application.bioluminate.protein_report_widget module
- schrodinger.application.bioluminate.protein_structure_quality module
- schrodinger.application.bioluminate.protein_structure_quality_ui module
- schrodinger.application.bioluminate.reactive_residues module
- schrodinger.application.bioluminate.run_propka module
- schrodinger.application.bioluminate.sliderchart module
- schrodinger.application.bioluminate.surfcomp module
- schrodinger.application.bioluminate.validate_imported_modules module
- schrodinger.application.bioluminate.workspacelabeler module
- Subpackages
- schrodinger.application.canvas package
- Submodules
- schrodinger.application.canvas.base module
- schrodinger.application.canvas.cluster module
- schrodinger.application.canvas.clustergui module
- schrodinger.application.canvas.fingerprint module
- schrodinger.application.canvas.fingerprintgui module
- schrodinger.application.canvas.r_group module
- schrodinger.application.canvas.r_group_dee module
- schrodinger.application.canvas.similarity module
- schrodinger.application.canvas.similaritygui module
- schrodinger.application.canvas.topo_descriptors module
- schrodinger.application.canvas.utils module
- Submodules
- schrodinger.application.combiglide package
- schrodinger.application.combinatorial_diversity package
- Submodules
- schrodinger.application.combinatorial_diversity.diversity_fingerprinter module
- schrodinger.application.combinatorial_diversity.diversity_selector module
- schrodinger.application.combinatorial_diversity.diversity_splitter module
- schrodinger.application.combinatorial_diversity.driver_utils module
- schrodinger.application.combinatorial_diversity.splitter_utils module
- Submodules
- schrodinger.application.combinatorial_explorer package
- schrodinger.application.combinatorial_screen package
- schrodinger.application.dendrogram namespace
- Submodules
- schrodinger.application.dendrogram.chemicalDendrogram module
- schrodinger.application.dendrogram.core_class module
- schrodinger.application.dendrogram.dendroMain module
- schrodinger.application.dendrogram.gradientSelector module
- schrodinger.application.dendrogram.proteinDendrogram module
- schrodinger.application.dendrogram.randTestSet module
- Submodules
- schrodinger.application.desmond namespace
- Subpackages
- Submodules
- schrodinger.application.desmond.arkdb module
- schrodinger.application.desmond.bennett module
- schrodinger.application.desmond.cms module
- schrodinger.application.desmond.cms_utils module
- schrodinger.application.desmond.cns_io module
- schrodinger.application.desmond.measurement module
- schrodinger.application.desmond.remd module
- schrodinger.application.desmond.struc module
- schrodinger.application.desmond.system_builder_util module
- schrodinger.application.desmond.torsion_related module
- schrodinger.application.desmond.util module
- schrodinger.application.epik package
- schrodinger.application.fragment_virtual_screening namespace
- schrodinger.application.glide package
- Subpackages
- Submodules
- schrodinger.application.glide.client_module module
- schrodinger.application.glide.ensemble_selection module
- schrodinger.application.glide.glide module
- schrodinger.application.glide.glideanalysis module
- schrodinger.application.glide.gui module
- schrodinger.application.glide.http_client module
- schrodinger.application.glide.http_server module
- schrodinger.application.glide.ligand_designer module
- schrodinger.application.glide.phase_subset module
- schrodinger.application.glide.poseviewconvert module
- schrodinger.application.glide.property_names module
- schrodinger.application.glide.sort_parser_common module
- schrodinger.application.glide.sort_utils module
- schrodinger.application.glide.utils module
- schrodinger.application.glide.xpdes module
- schrodinger.application.jaguar package
- Subpackages
- schrodinger.application.jaguar.distributed_frequencies package
- schrodinger.application.jaguar.gui package
- Subpackages
- schrodinger.application.jaguar.gui.tabs package
- Subpackages
- schrodinger.application.jaguar.gui.tabs.input_sub_tabs package
- schrodinger.application.jaguar.gui.tabs.per_atom_basis_pop_up package
- schrodinger.application.jaguar.gui.tabs.sub_tab_widgets package
- Submodules
- schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.base_widgets module
- schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.basis_set_widgets module
- schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.charge_constraints_widgets module
- schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.charge_selector module
- Submodules
- Submodules
- schrodinger.application.jaguar.gui.tabs.base_tab module
- schrodinger.application.jaguar.gui.tabs.coordinates module
- schrodinger.application.jaguar.gui.tabs.input_tab module
- schrodinger.application.jaguar.gui.tabs.irc_tab module
- schrodinger.application.jaguar.gui.tabs.molecule_tab module
- schrodinger.application.jaguar.gui.tabs.multi_structure_tab module
- schrodinger.application.jaguar.gui.tabs.optimization_tab module
- schrodinger.application.jaguar.gui.tabs.output_tab module
- schrodinger.application.jaguar.gui.tabs.properties_tab module
- schrodinger.application.jaguar.gui.tabs.reaction_molecules_tab module
- schrodinger.application.jaguar.gui.tabs.reaction_properties_tab module
- schrodinger.application.jaguar.gui.tabs.reaction_tab module
- schrodinger.application.jaguar.gui.tabs.scan_tab module
- schrodinger.application.jaguar.gui.tabs.scf_tab module
- schrodinger.application.jaguar.gui.tabs.solvation_tab module
- schrodinger.application.jaguar.gui.tabs.theory_tab module
- schrodinger.application.jaguar.gui.tabs.transition_state_tab module
- Subpackages
- schrodinger.application.jaguar.gui.ui package
- Subpackages
- Submodules
- schrodinger.application.jaguar.gui.ui.config_dialog_jaguar_ui module
- schrodinger.application.jaguar.gui.ui.coordinate_dialog_ui module
- schrodinger.application.jaguar.gui.ui.define_smarts_panel_ui module
- schrodinger.application.jaguar.gui.ui.edit_dialog_ui module
- schrodinger.application.jaguar.gui.ui.excited_state_widget_ui module
- schrodinger.application.jaguar.gui.ui.input_hb_bottom_ui module
- schrodinger.application.jaguar.gui.ui.input_hb_top_ui module
- schrodinger.application.jaguar.gui.ui.input_pka_bottom_ui module
- schrodinger.application.jaguar.gui.ui.input_pka_top_ui module
- schrodinger.application.jaguar.gui.ui.input_std_bottom_ui module
- schrodinger.application.jaguar.gui.ui.input_top_ui module
- schrodinger.application.jaguar.gui.ui.irc_bottom_ui module
- schrodinger.application.jaguar.gui.ui.irc_top_ui module
- schrodinger.application.jaguar.gui.ui.molecule_pka_bottom_ui module
- schrodinger.application.jaguar.gui.ui.molecule_std_bottom_ui module
- schrodinger.application.jaguar.gui.ui.molecule_top_ui module
- schrodinger.application.jaguar.gui.ui.multi_structures_ui module
- schrodinger.application.jaguar.gui.ui.optimization_tab_ui module
- schrodinger.application.jaguar.gui.ui.output_tab_ui module
- schrodinger.application.jaguar.gui.ui.pka_smarts_page_ui module
- schrodinger.application.jaguar.gui.ui.properties_tab_ui module
- schrodinger.application.jaguar.gui.ui.reaction_molecules_tab_ui module
- schrodinger.application.jaguar.gui.ui.reaction_properties_tab_ui module
- schrodinger.application.jaguar.gui.ui.reaction_tab_ui module
- schrodinger.application.jaguar.gui.ui.scan_tab_nextgeom_ui module
- schrodinger.application.jaguar.gui.ui.scan_tab_ui module
- schrodinger.application.jaguar.gui.ui.scf_tab_ui module
- schrodinger.application.jaguar.gui.ui.solvent_pka_tab_ui module
- schrodinger.application.jaguar.gui.ui.solvent_tab_ui module
- schrodinger.application.jaguar.gui.ui.spin_treatment_widget_ui module
- schrodinger.application.jaguar.gui.ui.theory_tab_ui module
- schrodinger.application.jaguar.gui.ui.transition_state_bottom_ui module
- schrodinger.application.jaguar.gui.ui.transition_state_top_ui module
- schrodinger.application.jaguar.gui.tabs package
- Submodules
- schrodinger.application.jaguar.gui.base_panel module
- schrodinger.application.jaguar.gui.basis_selector module
- schrodinger.application.jaguar.gui.edit_dialog module
- schrodinger.application.jaguar.gui.filedialog module
- schrodinger.application.jaguar.gui.input_tab_widgets module
- schrodinger.application.jaguar.gui.input_tab_widgets_hb module
- schrodinger.application.jaguar.gui.input_tab_widgets_pka module
- schrodinger.application.jaguar.gui.solvent_selector module
- schrodinger.application.jaguar.gui.theory_selector module
- schrodinger.application.jaguar.gui.theory_tab_widgets module
- schrodinger.application.jaguar.gui.timing module
- schrodinger.application.jaguar.gui.utils module
- Subpackages
- schrodinger.application.jaguar.qrnn package
- Submodules
- schrodinger.application.jaguar.autots_bonding module
- schrodinger.application.jaguar.autots_constants module
- schrodinger.application.jaguar.autots_exceptions module
- schrodinger.application.jaguar.autots_input module
- schrodinger.application.jaguar.autots_input_constants module
- schrodinger.application.jaguar.autots_keywords module
- schrodinger.application.jaguar.autots_rmsd module
- schrodinger.application.jaguar.autots_validation module
- schrodinger.application.jaguar.basis module
- schrodinger.application.jaguar.check_headers module
- schrodinger.application.jaguar.constants module
- schrodinger.application.jaguar.csrch_input_constants module
- schrodinger.application.jaguar.discretized_1d_function module
- schrodinger.application.jaguar.esol_constants module
- schrodinger.application.jaguar.esol_input module
- schrodinger.application.jaguar.esol_keywords module
- schrodinger.application.jaguar.esol_validation module
- schrodinger.application.jaguar.exceptions module
- schrodinger.application.jaguar.file_logger module
- schrodinger.application.jaguar.global_macros module
- schrodinger.application.jaguar.hess_guess module
- schrodinger.application.jaguar.hydrokinetic_constants module
- schrodinger.application.jaguar.hydrokinetic_input module
- schrodinger.application.jaguar.hydrokinetic_input_constants module
- schrodinger.application.jaguar.hydrokinetic_keywords module
- schrodinger.application.jaguar.hydrokinetic_validation module
- schrodinger.application.jaguar.input module
- schrodinger.application.jaguar.jagconvert module
- schrodinger.application.jaguar.jaguar_config_dialog module
- schrodinger.application.jaguar.jaguar_diff module
- schrodinger.application.jaguar.jaguar_keyword_utils module
- schrodinger.application.jaguar.jaguar_tasks module
- schrodinger.application.jaguar.keywordDB module
- schrodinger.application.jaguar.kinetics module
- schrodinger.application.jaguar.macro_pka_constants module
- schrodinger.application.jaguar.macro_pka_input module
- schrodinger.application.jaguar.macro_pka_keywords module
- schrodinger.application.jaguar.macro_pka_utils module
- schrodinger.application.jaguar.macro_pka_validation module
- schrodinger.application.jaguar.make_headers module
- schrodinger.application.jaguar.mmjag module
- schrodinger.application.jaguar.neural_network_optimizer module
- schrodinger.application.jaguar.nmr_basis module
- schrodinger.application.jaguar.nmr_interactions module
- schrodinger.application.jaguar.nmr_utils module
- schrodinger.application.jaguar.output module
- schrodinger.application.jaguar.permutation_symmetry module
- schrodinger.application.jaguar.pk50_report module
- schrodinger.application.jaguar.results module
- schrodinger.application.jaguar.rotation_barriers_input module
- schrodinger.application.jaguar.rotation_barriers_keywords module
- schrodinger.application.jaguar.rotation_barriers_validation module
- schrodinger.application.jaguar.scan module
- schrodinger.application.jaguar.simple_spec module
- schrodinger.application.jaguar.solvation_input module
- schrodinger.application.jaguar.solvation_keywords module
- schrodinger.application.jaguar.solvation_validation module
- schrodinger.application.jaguar.spectroscopy_defaults module
- schrodinger.application.jaguar.spin_simulator_v2 module
- schrodinger.application.jaguar.textparser module
- schrodinger.application.jaguar.update_pka_settings module
- schrodinger.application.jaguar.update_pka_settings_ui module
- schrodinger.application.jaguar.user_config module
- schrodinger.application.jaguar.utils module
- schrodinger.application.jaguar.validation module
- schrodinger.application.jaguar.workflow_input module
- schrodinger.application.jaguar.workflow_keywords module
- schrodinger.application.jaguar.workflow_validation module
- Subpackages
- schrodinger.application.job_monitor package
- Submodules
- schrodinger.application.job_monitor.buttons module
- schrodinger.application.job_monitor.diagnostics_dialog_ui module
- schrodinger.application.job_monitor.file_browser_ui module
- schrodinger.application.job_monitor.job_info_view_ui module
- schrodinger.application.job_monitor.job_monitor_diagnostics_dialog module
- schrodinger.application.job_monitor.job_monitor_file_browser module
- schrodinger.application.job_monitor.job_monitor_gui module
- schrodinger.application.job_monitor.job_monitor_icons_rc module
- schrodinger.application.job_monitor.job_monitor_models module
- schrodinger.application.job_monitor.job_monitor_progress_bar module
- schrodinger.application.job_monitor.job_monitor_stylesheets module
- schrodinger.application.job_monitor.job_monitor_table module
- schrodinger.application.job_monitor.job_monitor_widgets module
- schrodinger.application.job_monitor.top_level_view_ui module
- schrodinger.application.job_monitor.util module
- Submodules
- schrodinger.application.jobserver_cert_gui_dir namespace
- schrodinger.application.licensing package
- Subpackages
- schrodinger.application.licensing.licserver package
- Submodules
- schrodinger.application.licensing.licserver.client module
- schrodinger.application.licensing.licserver.exceptions module
- schrodinger.application.licensing.licserver.install module
- schrodinger.application.licensing.licserver.main module
- schrodinger.application.licensing.licserver.quick_slm_setup module
- schrodinger.application.licensing.licserver.server module
- Submodules
- schrodinger.application.licensing.licserver package
- Submodules
- Subpackages
- schrodinger.application.ligprep package
- schrodinger.application.livedesign package
- Submodules
- schrodinger.application.livedesign.constants module
- schrodinger.application.livedesign.cubes module
- schrodinger.application.livedesign.data_classes module
- schrodinger.application.livedesign.entry_types module
- schrodinger.application.livedesign.export_map_manager module
- schrodinger.application.livedesign.export_models module
- schrodinger.application.livedesign.export_setup_ui module
- schrodinger.application.livedesign.export_tasks module
- schrodinger.application.livedesign.export_ui module
- schrodinger.application.livedesign.icons_rc module
- schrodinger.application.livedesign.import_utils module
- schrodinger.application.livedesign.invalid_ge_id_warning_ui module
- schrodinger.application.livedesign.io_utils module
- schrodinger.application.livedesign.ld_base_classes module
- schrodinger.application.livedesign.ld_connection_checker module
- schrodinger.application.livedesign.ld_export module
- schrodinger.application.livedesign.ld_export_gui module
- schrodinger.application.livedesign.ld_folder_tree module
- schrodinger.application.livedesign.ld_glide_utils module
- schrodinger.application.livedesign.ld_import module
- schrodinger.application.livedesign.ld_import_utils module
- schrodinger.application.livedesign.ld_ligand_strain_utils module
- schrodinger.application.livedesign.ld_maestro_actions module
- schrodinger.application.livedesign.ld_maestro_actions_constants module
- schrodinger.application.livedesign.ld_mmgbsa_utils module
- schrodinger.application.livedesign.ld_model_input module
- schrodinger.application.livedesign.ld_settings module
- schrodinger.application.livedesign.ld_strain_rescore_utils module
- schrodinger.application.livedesign.ld_tasks module
- schrodinger.application.livedesign.ld_utils module
- schrodinger.application.livedesign.ldclient_proxy module
- schrodinger.application.livedesign.lid module
- schrodinger.application.livedesign.live_report_widget module
- schrodinger.application.livedesign.live_report_widget_ui module
- schrodinger.application.livedesign.login module
- schrodinger.application.livedesign.login2_ui module
- schrodinger.application.livedesign.login_gui module
- schrodinger.application.livedesign.login_gui2 module
- schrodinger.application.livedesign.login_ui module
- schrodinger.application.livedesign.maestro_ld_connection module
- schrodinger.application.livedesign.maestro_ld_mapping_ui module
- schrodinger.application.livedesign.maestro_sync module
- schrodinger.application.livedesign.mapping_widgets module
- schrodinger.application.livedesign.mappings_manager_ui module
- schrodinger.application.livedesign.panel_components module
- schrodinger.application.livedesign.pose_name_panel module
- schrodinger.application.livedesign.pose_name_panel_ui module
- schrodinger.application.livedesign.pse_helpers module
- schrodinger.application.livedesign.save_mapping_dialog_ui module
- schrodinger.application.livedesign.selection_pop_up_ui module
- schrodinger.application.livedesign.summary module
- schrodinger.application.livedesign.summary_ui module
- schrodinger.application.livedesign.tasks module
- schrodinger.application.livedesign.two_d_render module
- schrodinger.application.livedesign.upload_utils module
- schrodinger.application.livedesign.widgets module
- Submodules
- schrodinger.application.macromodel package
- schrodinger.application.matsci package
- Subpackages
- schrodinger.application.matsci.cctbx package
- schrodinger.application.matsci.elasticity package
- schrodinger.application.matsci.espresso package
- schrodinger.application.matsci.gsas package
- Submodules
- schrodinger.application.matsci.gsas.ElementTable module
- schrodinger.application.matsci.gsas.GSASIIElem module
- schrodinger.application.matsci.gsas.GSASIIfiles module
- schrodinger.application.matsci.gsas.GSASIIlattice module
- schrodinger.application.matsci.gsas.GSASIImath module
- schrodinger.application.matsci.gsas.GSASIIpwd module
- schrodinger.application.matsci.gsas.GSASIIspc module
- schrodinger.application.matsci.gsas.atmdata module
- Submodules
- schrodinger.application.matsci.mlearn package
- Subpackages
- schrodinger.application.matsci.mlearn.sklearn_json package
- Submodules
- schrodinger.application.matsci.mlearn.sklearn_json.classification module
- schrodinger.application.matsci.mlearn.sklearn_json.common module
- schrodinger.application.matsci.mlearn.sklearn_json.csr module
- schrodinger.application.matsci.mlearn.sklearn_json.decomposition module
- schrodinger.application.matsci.mlearn.sklearn_json.regression module
- Submodules
- schrodinger.application.matsci.mlearn.sklearn_json package
- Submodules
- Subpackages
- schrodinger.application.matsci.nano package
- Submodules
- schrodinger.application.matsci.nano.check module
- schrodinger.application.matsci.nano.constants module
- schrodinger.application.matsci.nano.interface_mod module
- schrodinger.application.matsci.nano.particle module
- schrodinger.application.matsci.nano.plane module
- schrodinger.application.matsci.nano.sheet module
- schrodinger.application.matsci.nano.slab module
- schrodinger.application.matsci.nano.space_groups module
- schrodinger.application.matsci.nano.surfaces_interfaces_mod module
- schrodinger.application.matsci.nano.tools module
- schrodinger.application.matsci.nano.tube module
- schrodinger.application.matsci.nano.util module
- schrodinger.application.matsci.nano.xtal module
- Submodules
- schrodinger.application.matsci.siteselector package
- Submodules
- schrodinger.application.matsci.amorphous module
- schrodinger.application.matsci.anharmonic module
- schrodinger.application.matsci.appbase module
- schrodinger.application.matsci.aseutils module
- schrodinger.application.matsci.atom_group module
- schrodinger.application.matsci.atomicsymbols module
- schrodinger.application.matsci.atomicsymbolsgui module
- schrodinger.application.matsci.automated_cg_mapping module
- schrodinger.application.matsci.automated_martini_mapping_protein module
- schrodinger.application.matsci.bandshape_utils module
- schrodinger.application.matsci.basiselements module
- schrodinger.application.matsci.boltzmann_avg_props module
- schrodinger.application.matsci.buildcomplex module
- schrodinger.application.matsci.buildcomplex2d module
- schrodinger.application.matsci.builderwidgets module
- schrodinger.application.matsci.cache module
- schrodinger.application.matsci.cg_mapping module
- schrodinger.application.matsci.cgforcefield module
- schrodinger.application.matsci.cgforcefieldgui module
- schrodinger.application.matsci.chargegui module
- schrodinger.application.matsci.clusterstruct module
- schrodinger.application.matsci.clusterstructgui module
- schrodinger.application.matsci.coarsegrain module
- schrodinger.application.matsci.codeutils module
- schrodinger.application.matsci.colorutils module
- schrodinger.application.matsci.configdlgs module
- schrodinger.application.matsci.controlicons_rc module
- schrodinger.application.matsci.crest module
- schrodinger.application.matsci.density_analysis module
- schrodinger.application.matsci.density_analysis_widget module
- schrodinger.application.matsci.desconfig module
- schrodinger.application.matsci.desmondutils module
- schrodinger.application.matsci.deswidgets module
- schrodinger.application.matsci.elementalprops module
- schrodinger.application.matsci.enc module
- schrodinger.application.matsci.enumeration module
- schrodinger.application.matsci.equilibrium_md module
- schrodinger.application.matsci.etarotamers module
- schrodinger.application.matsci.etatoggle module
- schrodinger.application.matsci.fragments module
- schrodinger.application.matsci.freevolume module
- schrodinger.application.matsci.genetic_optimization module
- schrodinger.application.matsci.geometry module
- schrodinger.application.matsci.graph module
- schrodinger.application.matsci.gutils module
- schrodinger.application.matsci.hdfutils module
- schrodinger.application.matsci.jaguar_multistage_workflow_utils module
- schrodinger.application.matsci.jaguar_restart module
- schrodinger.application.matsci.jaguarworkflows module
- schrodinger.application.matsci.jagwidgets module
- schrodinger.application.matsci.jobdirdlg module
- schrodinger.application.matsci.jobutils module
- schrodinger.application.matsci.jwsteps module
- schrodinger.application.matsci.kmc module
- schrodinger.application.matsci.kmcgui module
- schrodinger.application.matsci.maestrocmds module
- schrodinger.application.matsci.mecp_mod module
- schrodinger.application.matsci.ml_formulations_gui_utils module
- schrodinger.application.matsci.montecarlo module
- schrodinger.application.matsci.msconst module
- schrodinger.application.matsci.msminimize module
- schrodinger.application.matsci.msprops module
- schrodinger.application.matsci.mstest module
- schrodinger.application.matsci.msutils module
- schrodinger.application.matsci.mswidgets module
- schrodinger.application.matsci.multiapp module
- schrodinger.application.matsci.optoelectronics module
- schrodinger.application.matsci.order_parameter_mod module
- schrodinger.application.matsci.packmol module
- schrodinger.application.matsci.parserutils module
- schrodinger.application.matsci.pbcutils module
- schrodinger.application.matsci.permittivity module
- schrodinger.application.matsci.plotwidgets module
- schrodinger.application.matsci.pmgutils module
- schrodinger.application.matsci.polymer module
- schrodinger.application.matsci.qualityslider module
- schrodinger.application.matsci.qubec_utils module
- schrodinger.application.matsci.rdpattern module
- schrodinger.application.matsci.rdpattern_gui module
- schrodinger.application.matsci.reaction_workflow_enum_utils module
- schrodinger.application.matsci.reaction_workflow_gui_utils module
- schrodinger.application.matsci.reaction_workflow_utils module
- schrodinger.application.matsci.reorder module
- schrodinger.application.matsci.reordergui module
- schrodinger.application.matsci.reportutils module
- schrodinger.application.matsci.rxn_channel module
- schrodinger.application.matsci.rxn_path module
- schrodinger.application.matsci.sculptcomplex module
- schrodinger.application.matsci.shapes module
- schrodinger.application.matsci.sliceplot module
- schrodinger.application.matsci.smartsutils module
- schrodinger.application.matsci.smartsutilsgui module
- schrodinger.application.matsci.species module
- schrodinger.application.matsci.speciesgui module
- schrodinger.application.matsci.spectra module
- schrodinger.application.matsci.stage_widgets module
- schrodinger.application.matsci.stress_strain module
- schrodinger.application.matsci.swap_fragments_utils module
- schrodinger.application.matsci.textlogger module
- schrodinger.application.matsci.typography module
- schrodinger.application.matsci.uq_utils module
- schrodinger.application.matsci.wfmanagement module
- schrodinger.application.matsci.xrd module
- schrodinger.application.matsci.yamlutils module
- schrodinger.application.matsci.zmutils module
- Subpackages
- schrodinger.application.medchem package
- schrodinger.application.mopac package
- Submodules
- schrodinger.application.mopac.exceptions module
- schrodinger.application.mopac.mopac_backend module
- schrodinger.application.mopac.mopac_launchers module
- schrodinger.application.mopac.mopac_parser module
- schrodinger.application.mopac.mopac_startup module
- schrodinger.application.mopac.mopac_surfaces module
- schrodinger.application.mopac.results_main module
- schrodinger.application.mopac.structure_launchers module
- schrodinger.application.mopac.utils module
- Submodules
- schrodinger.application.pathfinder package
- Submodules
- schrodinger.application.pathfinder.aligner module
- schrodinger.application.pathfinder.analysis module
- schrodinger.application.pathfinder.multiroute module
- schrodinger.application.pathfinder.reaction module
- schrodinger.application.pathfinder.render module
- schrodinger.application.pathfinder.route module
- schrodinger.application.pathfinder.synthesis module
- Submodules
- schrodinger.application.phase package
- Subpackages
- schrodinger.application.phase.packages package
- Subpackages
- schrodinger.application.phase.packages.hypo_refine namespace
- Submodules
- schrodinger.application.phase.packages.hypo_refine.hypo_utils module
- schrodinger.application.phase.packages.hypo_refine.job_utils module
- schrodinger.application.phase.packages.hypo_refine.option_utils module
- schrodinger.application.phase.packages.hypo_refine.project_utils module
- schrodinger.application.phase.packages.hypo_refine.screen_utils module
- Submodules
- schrodinger.application.phase.packages.hypo_refine namespace
- Submodules
- schrodinger.application.phase.packages.align_ligands_driver_options module
- schrodinger.application.phase.packages.bedroc_screener module
- schrodinger.application.phase.packages.cat_hypo_converter module
- schrodinger.application.phase.packages.conformer_reader module
- schrodinger.application.phase.packages.conformer_storage module
- schrodinger.application.phase.packages.ligand_aligner module
- schrodinger.application.phase.packages.mmp2d module
- schrodinger.application.phase.packages.mmp3d_driver_utils module
- schrodinger.application.phase.packages.mmp3dscreener module
- schrodinger.application.phase.packages.mmp_compare_utils module
- schrodinger.application.phase.packages.oned_app_utils module
- schrodinger.application.phase.packages.oned_option_utils module
- schrodinger.application.phase.packages.oned_task_utils module
- schrodinger.application.phase.packages.phase_convert_MOE module
- schrodinger.application.phase.packages.phase_database_arg_utils module
- schrodinger.application.phase.packages.phase_database_job_utils module
- schrodinger.application.phase.packages.phase_option_utils module
- schrodinger.application.phase.packages.phase_screen_driver_utils module
- schrodinger.application.phase.packages.phase_screen_utils module
- schrodinger.application.phase.packages.phase_utils module
- schrodinger.application.phase.packages.shape_binary_utils module
- schrodinger.application.phase.packages.shape_creation_logic module
- schrodinger.application.phase.packages.shape_diversity module
- schrodinger.application.phase.packages.shape_generator module
- schrodinger.application.phase.packages.shape_ligprep module
- schrodinger.application.phase.packages.shape_screen_al_driver module
- schrodinger.application.phase.packages.shape_screen_al_node module
- schrodinger.application.phase.packages.shape_screen_al_utils module
- schrodinger.application.phase.packages.shape_screen_arg_utils module
- schrodinger.application.phase.packages.shape_screen_gpu_generate module
- schrodinger.application.phase.packages.shape_screen_gpu_update module
- schrodinger.application.phase.packages.shape_screen_job_utils module
- schrodinger.application.phase.packages.shape_screen_oned_driver_utils module
- schrodinger.application.phase.packages.test module
- Subpackages
- schrodinger.application.phase.shape_screen_reporter package
- schrodinger.application.phase.packages package
- Submodules
- schrodinger.application.phase.compare_utils module
- schrodinger.application.phase.constants module
- schrodinger.application.phase.create_xvol module
- schrodinger.application.phase.featureselector module
- schrodinger.application.phase.hypothesis module
- schrodinger.application.phase.hypothesis_binding_modes module
- schrodinger.application.phase.input module
- schrodinger.application.phase.license module
- schrodinger.application.phase.phase_markers module
- schrodinger.application.phase.phase_widgets module
- schrodinger.application.phase.pt_hypothesis module
- schrodinger.application.phase.utils module
- Subpackages
- schrodinger.application.prepwizard2 package
- schrodinger.application.prime package
- schrodinger.application.pymol package
- Subpackages
- Submodules
- schrodinger.application.pymol.constants module
- schrodinger.application.pymol.export_handler module
- schrodinger.application.pymol.export_to_pymol_gui module
- schrodinger.application.pymol.gui_models module
- schrodinger.application.pymol.mae_sync module
- schrodinger.application.pymol.pymol4maestro module
- schrodinger.application.pymol.pymol4maestro_ui module
- schrodinger.application.pymol.utils module
- schrodinger.application.qsite package
- schrodinger.application.scaffold_enumeration package
- Submodules
- schrodinger.application.scaffold_enumeration.atomlist module
- schrodinger.application.scaffold_enumeration.common module
- schrodinger.application.scaffold_enumeration.cxsmiles module
- schrodinger.application.scaffold_enumeration.layered module
- schrodinger.application.scaffold_enumeration.linknode module
- schrodinger.application.scaffold_enumeration.markush module
- schrodinger.application.scaffold_enumeration.mdl module
- schrodinger.application.scaffold_enumeration.posvarbond module
- schrodinger.application.scaffold_enumeration.rdcml module
- Submodules
- schrodinger.application.steps package
- Submodules
- schrodinger.application.steps.basesteps module
- schrodinger.application.steps.converters module
- schrodinger.application.steps.dataclasses module
- schrodinger.application.steps.docking module
- schrodinger.application.steps.enumerators module
- schrodinger.application.steps.env_keys module
- schrodinger.application.steps.filters module
- schrodinger.application.steps.licensing module
- schrodinger.application.steps.ligprep module
- schrodinger.application.steps.scorers module
- schrodinger.application.steps.test module
- schrodinger.application.steps.transformers module
- schrodinger.application.steps.utils module
- Submodules
- schrodinger.application.transforms package
- Subpackages
- Submodules
- schrodinger.application.transforms.chem module
- schrodinger.application.transforms.chemio module
- schrodinger.application.transforms.dock module
- schrodinger.application.transforms.dofn_utils module
- schrodinger.application.transforms.enumerators module
- schrodinger.application.transforms.filters module
- schrodinger.application.transforms.ligprep module
- schrodinger.application.transforms.test module
- schrodinger.application.transforms.validators module
- schrodinger.application.vss package
- schrodinger.application.watermap package
- schrodinger.application.xtb package
- Submodules
- schrodinger.application.xtb.constants module
- schrodinger.application.xtb.input module
- schrodinger.application.xtb.keywords module
- schrodinger.application.xtb.output module
- schrodinger.application.xtb.runner module
- schrodinger.application.xtb.textparser module
- schrodinger.application.xtb.utilities module
- Submodules