schrodinger.application.bioluminate package

BioLuminate specific functionality

Subpackages

• schrodinger.application.bioluminate.actions package
  • Submodules
    • schrodinger.application.bioluminate.actions.configs module
    • schrodinger.application.bioluminate.actions.factory module
    • schrodinger.application.bioluminate.actions.icons module
    • schrodinger.application.bioluminate.actions.icons_rc module
• schrodinger.application.bioluminate.anarci namespace
  • Submodules
    • schrodinger.application.bioluminate.anarci.anarci_adapter module
    • schrodinger.application.bioluminate.anarci.annotate module
    • schrodinger.application.bioluminate.anarci.loop_ranges module
• schrodinger.application.bioluminate.antibody package
  • Subpackages
    • schrodinger.application.bioluminate.antibody.io namespace
      • Submodules
        • schrodinger.application.bioluminate.antibody.io.csv_reader module
  • Submodules
    • schrodinger.application.bioluminate.antibody.annotate module
    • schrodinger.application.bioluminate.antibody.annotation_constants module
    • schrodinger.application.bioluminate.antibody.antibody_homology_report_writer module
    • schrodinger.application.bioluminate.antibody.antibody_modeling_yaml module
    • schrodinger.application.bioluminate.antibody.assembly module
    • schrodinger.application.bioluminate.antibody.assembly_yaml module
    • schrodinger.application.bioluminate.antibody.grafting module
    • schrodinger.application.bioluminate.antibody.management module
    • schrodinger.application.bioluminate.antibody.models module
    • schrodinger.application.bioluminate.antibody.scaffold_search module
    • schrodinger.application.bioluminate.antibody.search_results_table module
    • schrodinger.application.bioluminate.antibody.sequence_indexer module
    • schrodinger.application.bioluminate.antibody.test_immunebuilder_adapter module
    • schrodinger.application.bioluminate.antibody.utils module
• schrodinger.application.bioluminate.drivers package
  • Submodules
    • schrodinger.application.bioluminate.drivers.io module
• schrodinger.application.bioluminate.epitope namespace
  • Subpackages
    • schrodinger.application.bioluminate.epitope.utils namespace
      • Submodules
        • schrodinger.application.bioluminate.epitope.utils.esc_utils module
        • schrodinger.application.bioluminate.epitope.utils.faux-epitope module
  • Submodules
    • schrodinger.application.bioluminate.epitope.driver module
    • schrodinger.application.bioluminate.epitope.psc_workflow module
• schrodinger.application.bioluminate.immunebuilder namespace
  • Submodules
    • schrodinger.application.bioluminate.immunebuilder.immunebuilder_adapter module
• schrodinger.application.bioluminate.met_oxidation package
  • Submodules
    • schrodinger.application.bioluminate.met_oxidation.hmc_sim_runner module
    • schrodinger.application.bioluminate.met_oxidation.md_sim_runner module
• schrodinger.application.bioluminate.mhc namespace
  • Submodules
    • schrodinger.application.bioluminate.mhc.docking_angles module
• schrodinger.application.bioluminate.nucleic package
  • Submodules
    • schrodinger.application.bioluminate.nucleic.constants module
    • schrodinger.application.bioluminate.nucleic.mutator module
• schrodinger.application.bioluminate.patch_utils package
  • Submodules
    • schrodinger.application.bioluminate.patch_utils.msurfext module
    • schrodinger.application.bioluminate.patch_utils.patch_finder module
    • schrodinger.application.bioluminate.patch_utils.pre_analyze module
    • schrodinger.application.bioluminate.patch_utils.settings module
• schrodinger.application.bioluminate.peptide_sar namespace
  • Submodules
    • schrodinger.application.bioluminate.peptide_sar.encode module
    • schrodinger.application.bioluminate.peptide_sar.io module
    • schrodinger.application.bioluminate.peptide_sar.label module
    • schrodinger.application.bioluminate.peptide_sar.sar module
    • schrodinger.application.bioluminate.peptide_sar.statistics module
• schrodinger.application.bioluminate.pose_filtering package
  • Submodules
    • schrodinger.application.bioluminate.pose_filtering.csv_filter module
    • schrodinger.application.bioluminate.pose_filtering.hdx_analysis module
    • schrodinger.application.bioluminate.pose_filtering.hdx_calc module
    • schrodinger.application.bioluminate.pose_filtering.hdx_io module
    • schrodinger.application.bioluminate.pose_filtering.operators module
    • schrodinger.application.bioluminate.pose_filtering.residue_filter module
    • schrodinger.application.bioluminate.pose_filtering.test module
• schrodinger.application.bioluminate.protein package
  • Submodules
    • schrodinger.application.bioluminate.protein.mutator module
    • schrodinger.application.bioluminate.protein.protein module
    • schrodinger.application.bioluminate.protein.utils module
• schrodinger.application.bioluminate.protein_interaction package
  • Submodules
    • schrodinger.application.bioluminate.protein_interaction.calculate module
    • schrodinger.application.bioluminate.protein_interaction.tasks module
    • schrodinger.application.bioluminate.protein_interaction.utils module
• schrodinger.application.bioluminate.residue_scanning package
  • Submodules
    • schrodinger.application.bioluminate.residue_scanning.properties module
• schrodinger.application.bioluminate.ssv package
  • Submodules
    • schrodinger.application.bioluminate.ssv.toolbars module
    • schrodinger.application.bioluminate.ssv.viewer module
• schrodinger.application.bioluminate.tcr namespace
  • Submodules
    • schrodinger.application.bioluminate.tcr.annotate module
• schrodinger.application.bioluminate.update_germline_db namespace
  • Submodules
    • schrodinger.application.bioluminate.update_germline_db.translate_db module

Submodules

• schrodinger.application.bioluminate.bwidgets module
• schrodinger.application.bioluminate.classify module
• schrodinger.application.bioluminate.escomp module
• schrodinger.application.bioluminate.interaction_calculator module
• schrodinger.application.bioluminate.methionine_oxidation module
• schrodinger.application.bioluminate.mutation module
• schrodinger.application.bioluminate.pml_menus module
• schrodinger.application.bioluminate.propfilter module
• schrodinger.application.bioluminate.propfilter_ui module
• schrodinger.application.bioluminate.propka_parse module
• schrodinger.application.bioluminate.protein_protein_docking_shared module
• schrodinger.application.bioluminate.protein_report_widget module
• schrodinger.application.bioluminate.protein_structure_quality module
• schrodinger.application.bioluminate.protein_structure_quality_ui module
• schrodinger.application.bioluminate.reactive_residues module
• schrodinger.application.bioluminate.run_propka module
• schrodinger.application.bioluminate.sliderchart module
• schrodinger.application.bioluminate.surfcomp module
• schrodinger.application.bioluminate.validate_imported_modules module
• schrodinger.application.bioluminate.workspacelabeler module