schrodinger.application.pymol.pymol4maestro module

This script provides a panel for single-click transfer of the workspace or selected entries into PyMOL while preserving much of the Maestro display state including visible representations, camera zoom and position, clipping planes, and colors.

NOTICE: Requires Incentive PyMOL (does not work with Open-Source PyMOL).

For information on obtaining access to commercial PyMOL builds to use with this script, please contact Schrodinger directly via sales@schrodinger.com.

class schrodinger.application.pymol.pymol4maestro.EntryMode(value, names=None, *, module=None, qualname=None, type=None, start=1, boundary=None)

Bases: enum.Enum

Workspace = 1

ProjectTableSelected = 2

ProjectTableAll = 3

class schrodinger.application.pymol.pymol4maestro.panel

Bases: object

Class for the control panel

degree_seconds_mapping_dict = {30: [2, 4, 8], 60: [4, 8, 16], 90: [6, 12, 24], 120: [8, 16, 32]}

__init__()

updateScenesRB()

Update scenes rb UI component before showing the panel

scenesChecked(checked)

Called when scenes_rb checked

Parameters

checked (bool) – True if scenes_rb is ‘checked’

updateMovieOptions(checked)

Update movies options Called when movie_cb checked and from scenesChecked

Parameters

checked (bool) – True if movie_cb is ‘checked’

degreesCurrentIndexChanged(index)

Called when degrees_cb index changed

Parameters

index (int) – the index of the degrees_cb

store_prefs()

Store applicable GUI state to preferences.

help()

Open the documentation dialog

browse()

Open a file dialog to browse for the pymol executable. Updates the pymol_location_le widget and the pymol_location preference on success.

launch()

Launch a new PyMOL instance and append it to self.instances.

send(command, recurse=False)

Send command to active PyMOL instance.

Parameters

• command (str) – Command to send

• recurse (bool) – If more than one PyMOL instance has been opened and the most recent one is not alive anymore, remove it and try the next one.

Returns

The PyMOL instance on success, or None if the command could not be sent.

isAlive()

Return true if there is an active PyMOL instance :rtype: bool

slotSend()

Slot for the “Send” button. Shows a popup on error.

send_entries(limit)

Send entries from the project table to PyMOL :param limit: See schrodinger.utils.pymol.process_prj

send_settings()

Transfer various configuration options from Maestro

send_workspace()

Send workspace configuration options and included entries.

send_scenes()

Send project scenes

mimic()

toggle_maestro_mouse(state)

Change the mouse mode in PyMOL :type state: bool :param state: If true, emulate Maestro mouse actions, otherwise use PyMOL’s default mouse mode

schrodinger.application.pymol.pymol4maestro.show_panel()