schrodinger.application.bioluminate.nucleic.mutator module

class schrodinger.application.bioluminate.nucleic.mutator.NucleobaseMutator(mutations, concurrent)

Bases: MacromoleculeMutator

Mutates a set of residues in a DNA or RNA structure allowing concurrent mutations as well as the option to limit concurrent mutations to sequential residues only.

MUTS_FILE_REGEX = re.compile('(?P<chain>[a-zA-Z0-9_]{1})\n    :\n    (?P<resnum>-?\\d+)\n    (?P<inscode>[a-zA-Z]{1})?  # optional\n    ->\n    (?P<new_resname>(A|C|T|G|U))\n    ', re.VERBOSE)

RES_FILE_REGEX = re.compile('(?P<chain>[a-zA-Z0-9_]{1})\n    :\n    (?P<resnum>-?\\d+)\n    (?P<inscode>[a-zA-Z]{1})?  # optional\n    \\s?                        # optional\n    (?P<mutations>(A|C|T|G|U)(,A|,C|,T|,G|,U)*)? # op, re.VERBOSE)

SUPPORTED_BUILD_RESIDUES = ['A', 'C', 'T', 'G', 'U']

static makeMutation(mutation_tuple, polymer_type)

Convert a mutation tuple into a Mutation object.

class schrodinger.application.bioluminate.nucleic.mutator.NucleobaseMutation(chain: str, res_num: int, inscode: str, to_res_3l: str, polymer_type: str, from_res_3l: str = None, _resnum_with_inscode: str = None, is_wt_mut: bool = False)

Bases: Mutation

property mut_frag_name