schrodinger.protein.tasks.sta module

class schrodinger.protein.tasks.sta.STATask(*args, _param_type=<object object>, **kwargs)

Bases: schrodinger.tasks.tasks.SubprocessCmdTask

output: list

A parameter of the class.

class Input(*args, _param_type=<object object>, **kwargs)

Bases: schrodinger.models.parameters.CompoundParam

Variables

• query_seq – The sequence to use as the STA query sequence

• ref_seq – The sequence to use as the STA reference structure

• constraints – Pairs of (query_seq, ref_seq) residues to constrain

query_seq: schrodinger.protein.sequence.ProteinSequence

A parameter of the class.

ref_seq: schrodinger.protein.sequence.ProteinSequence

A parameter of the class.

protein_family: str

A parameter of the class.

constraints: list

A parameter of the class.

constraintsChanged

A pyqtSignal emitted by instances of the class.

constraintsReplaced

A pyqtSignal emitted by instances of the class.

protein_familyChanged

A pyqtSignal emitted by instances of the class.

protein_familyReplaced

A pyqtSignal emitted by instances of the class.

query_seqChanged

A pyqtSignal emitted by instances of the class.

query_seqReplaced

A pyqtSignal emitted by instances of the class.

ref_seqChanged

A pyqtSignal emitted by instances of the class.

ref_seqReplaced

A pyqtSignal emitted by instances of the class.

makeCmd()

@overrides: tasks.AbstractCmdTask

getGaps()

calling_contextChanged

A pyqtSignal emitted by instances of the class.

calling_contextReplaced

A pyqtSignal emitted by instances of the class.

failure_infoChanged

A pyqtSignal emitted by instances of the class.

failure_infoReplaced

A pyqtSignal emitted by instances of the class.

input: parameters.CompoundParam

A parameter of the class.

inputChanged

A pyqtSignal emitted by instances of the class.

inputReplaced

A pyqtSignal emitted by instances of the class.

max_progressChanged

A pyqtSignal emitted by instances of the class.

max_progressReplaced

A pyqtSignal emitted by instances of the class.

nameChanged

A pyqtSignal emitted by instances of the class.

nameReplaced

A pyqtSignal emitted by instances of the class.

outputChanged

A pyqtSignal emitted by instances of the class.

outputReplaced

A pyqtSignal emitted by instances of the class.

progressChanged

A pyqtSignal emitted by instances of the class.

progressReplaced

A pyqtSignal emitted by instances of the class.

progress_stringChanged

A pyqtSignal emitted by instances of the class.

progress_stringReplaced

A pyqtSignal emitted by instances of the class.

statusChanged

A pyqtSignal emitted by instances of the class.

statusReplaced

A pyqtSignal emitted by instances of the class.