schrodinger.protein.properties module¶

class schrodinger.protein.properties.PropertySource¶

Bases: schrodinger.models.jsonable.JsonableEnum

Residue = 1¶

Sequence = 2¶

Structure = 3¶

class schrodinger.protein.properties.PropertyType¶

Bases: schrodinger.models.jsonable.JsonableEnum

Descriptor = 1¶

StructureProperty = 2¶

schrodinger.protein.properties.get_prop_name_to_display_name_map()¶

class schrodinger.protein.properties.SequenceProperty(*args, _param_type=<object object>, **kwargs)¶

Bases: schrodinger.models.parameters.CompoundParam

visible: bool¶: A parameter of the class.

property_name: str¶: A parameter of the class.

property_source: schrodinger.protein.properties.PropertySource¶: A parameter of the class.

property_type: schrodinger.protein.properties.PropertyType¶: A parameter of the class.

description: str¶: A parameter of the class.

display_name: str¶: A parameter of the class.

__init__(*args, **kwargs)¶

classmethod adapter_50002(json_dict)¶: In 50002 we split the property_source param into two separate property_type and property_source params

Descriptor = 1¶

Residue = 1¶

Sequence = 2¶

Structure = 3¶

StructureProperty = 2¶

descriptionChanged¶: A pyqtSignal emitted by instances of the class.

descriptionReplaced¶: A pyqtSignal emitted by instances of the class.

display_nameChanged¶: A pyqtSignal emitted by instances of the class.

display_nameReplaced¶: A pyqtSignal emitted by instances of the class.

property_nameChanged¶: A pyqtSignal emitted by instances of the class.

property_nameReplaced¶: A pyqtSignal emitted by instances of the class.

property_sourceChanged¶: A pyqtSignal emitted by instances of the class.

property_sourceReplaced¶: A pyqtSignal emitted by instances of the class.

property_typeChanged¶: A pyqtSignal emitted by instances of the class.

property_typeReplaced¶: A pyqtSignal emitted by instances of the class.

visibleChanged¶: A pyqtSignal emitted by instances of the class.

visibleReplaced¶: A pyqtSignal emitted by instances of the class.

schrodinger.protein.properties.get_CA_atom_props(aln)¶

Get the CA atom properties of each structured residues in the alignment.

Parameters: aln (schrodinger.protein.alignment.BaseAlignment) – The alignment to use.
Returns: list of sequence property object.
Return type: List[properties.SequenceProperty]