schrodinger.application.combiglide.connection_storage module¶
- schrodinger.application.combiglide.connection_storage.get_connection_color(i)¶
Return the appropriate color for the i-th connection
- Parameters
i (int) – The connection number to get colors for
- Returns
The appropriate color, formatted as a list of three integers between 0 and 255
- Return type
list
- schrodinger.application.combiglide.connection_storage.get_color_list(i)¶
Return a list of colors from 0 to i
- Parameters
i (int) – The connection number to get colors up to
- Returns
A list of appropriate colors, where each color is formatted as a list of three integers between 0 and 255
- Return type
list
- schrodinger.application.combiglide.connection_storage.get_flat_color_list(i)¶
Return a flat list of colors from 0 to i
- Parameters
i (int) – The connection number to get colors up to
- Returns
A flat list of appropriate colors of length 3*i
- Return type
list
- schrodinger.application.combiglide.connection_storage.extend_connection_colors(idx)¶
Make sure that connection_colors is at least as long as the requested length
- Parameters
i (int) – The desired length of connection_colors
- schrodinger.application.combiglide.connection_storage.gen_random_color()¶
Generate a new random color
- Returns
A random color, formatted as a list of three integers between 0 and 255
- Return type
list
- schrodinger.application.combiglide.connection_storage.reset_colors()¶
Reset the connection_colors list back to its original state. Intended for use in unit testing
- class schrodinger.application.combiglide.connection_storage.ConnectionStorage¶
Bases:
PyQt6.QtCore.QObjectThis class is used to store the data of the current connection table.
- __init__()¶
- reset()¶
- collectionChanged()¶
- hasChanged()¶
- changesSaved()¶
- addPair(bp, name='', csize=0, minlink=0, maxlink=0, cfile=0, bondToH=False, selected=False)¶
Adds a bond pair to the list of bond pairs, and also creates a more or less empty data line for that data. Data in array: [Attachment name, collection size, min linkers, max linkers, collection file, table row]
- bondPair(a1, a2)¶
- switchPair(bp, newbp=False)¶
- changePair(oldbp, newbp)¶
- deletePair(bp)¶
- setData(bp, name, csize, minlink, maxlink, cfile, row, bondToH, selected)¶
- setConnectionName(bp, cname)¶
- setConnectionSize(bp, csize)¶
- setConnectionMinLink(bp, minlink)¶
- setConnectionMaxLink(bp, maxlink)¶
- setConnectionFile(bp, cfile)¶
- setRow(bp, row)¶
- setSelected(bp, selected)¶
- getConnectionName(bp)¶
- getConnectionSize(bp)¶
- getConnectionMinLink(bp)¶
- getConnectionMaxLink(bp)¶
- getConnectionFile(bp)¶
- getRow(bp)¶
- bondToH(bp)¶
- getSelected(bp)¶
- clearSelected()¶
- size()¶
- getPairFromRow(num)¶
- getBondColorList()¶
- containsMultipleCores()¶
- getConnectionColor(i)¶
Return the appropriate connection color for the i-th connection
- Parameters
i (int) – The connection number to get the color for
- Returns
The appropriate color, formatted as a list of three integers between 0 and 255
- Return type
list
- setIgnorePair(bp)¶
- removeIgnorePair()¶
- getBondList()¶
- getBondListWithIgnored()¶
- getAtomList()¶
- getCompleteBondList()¶
- getAtomColorList()¶