schrodinger.protein.helm.helm_renderer module

class schrodinger.protein.helm.helm_renderer.HexColor(value)

Bases: enum.Enum

An enumeration.

Acidic = <PyQt6.QtGui.QColor object>

Basic = <PyQt6.QtGui.QColor object>

Aliphatic = <PyQt6.QtGui.QColor object>

Aromatic = <PyQt6.QtGui.QColor object>

Hydrophilic = <PyQt6.QtGui.QColor object>

Thiol = <PyQt6.QtGui.QColor object>

IminoAcid = <PyQt6.QtGui.QColor object>

VariablePolar = <PyQt6.QtGui.QColor object>

NABackBone = <PyQt6.QtGui.QColor object>

Adenine = <PyQt6.QtGui.QColor object>

Cytosine = <PyQt6.QtGui.QColor object>

Guanine = <PyQt6.QtGui.QColor object>

Thymine = <PyQt6.QtGui.QColor object>

Uracil = <PyQt6.QtGui.QColor object>

Other = <PyQt6.QtGui.QColor object>

Chem = <PyQt6.QtGui.QColor object>

Black = <PyQt6.QtGui.QColor object>

Gray3 = <PyQt6.QtGui.QColor object>

Gray4 = <PyQt6.QtGui.QColor object>

Gray6 = <PyQt6.QtGui.QColor object>

DarkRed = <PyQt6.QtGui.QColor object>

White = <PyQt6.QtGui.QColor object>

class schrodinger.protein.helm.helm_renderer.ZOrder(value)

Bases: enum.IntEnum

Enum describing which layer (Z value) each GraphicsItem is drawn on.

BehindMonomer = 1

DefaultMonomerItem = 2

InFrontMonomer = 3

schrodinger.protein.helm.helm_renderer.get_polymer_type(monomer: rdkit.Chem.rdchem.Atom) → schrodinger.protein.helm._helm_parser.PolymerType

schrodinger.protein.helm.helm_renderer.get_natural_analog(monomer: rdkit.Chem.rdchem.Atom) → str

schrodinger.protein.helm.helm_renderer.protect_painter(painter_method: Callable) → Callable

Decorator which can be applied to paint methods to ensure the state of the painter isn’t modified

Parameters

painter_method – method to wrap. Should take a painter as its first argument

Returns

wrapped function

class schrodinger.protein.helm.helm_renderer.HelmMonomer(*, res_name: str, polymer_type: schrodinger.protein.helm._helm_parser.PolymerType, is_branch: bool, is_smiles: bool, position: PyQt6.QtCore.QPointF, res_display_type=None)

Bases: object

__init__(*, res_name: str, polymer_type: schrodinger.protein.helm._helm_parser.PolymerType, is_branch: bool, is_smiles: bool, position: PyQt6.QtCore.QPointF, res_display_type=None)

property is_standard: bool

property is_d_amino_acid: bool

property is_nucleotide_sugar: bool

property is_nucleotide_phosphate: bool

property is_nucleotide_backbone: bool

class schrodinger.protein.helm.helm_renderer.HelmMonomerTextLabel(text: str, size: int = 14, weight: PyQt6.QtGui.QFont.Weight = Weight.Normal, color: schrodinger.protein.helm.helm_renderer.HexColor = HexColor.Black, parent=None)

Bases: PyQt6.QtWidgets.QGraphicsPathItem

GraphicsItem used for text labeling all monomers. Sets default font, etc., specific to the Helm rendering use case.

Text is rendered as a path for portability across platforms.

__init__(text: str, size: int = 14, weight: PyQt6.QtGui.QFont.Weight = Weight.Normal, color: schrodinger.protein.helm.helm_renderer.HexColor = HexColor.Black, parent=None)

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

brush(self) → QBrush

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

path(self) → QPainterPath

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setBrush(self, brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient])

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPath(self, path: QPainterPath)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

Bases: object

Mixin which establishes the necessary methods to render the monomer item in the QGraphicsScene. Handles position offsets so that the center of the shape appears at the position set in the monomer object

Also defines default brush and pen settings

MAGNIFY_FACTOR = 1.0

DEFAULT_X_RADIUS = 12.5

DEFAULT_Y_RADIUS = 12.5

__init__(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

getLabelText() → str

Get the text to be displayed in the monomer’s label.

If the assigned name is too long, truncate it and add an ellipsis.

setup()

Initialize the current monomer

getMonomerResizingProposal(text_x_radius: float, text_y_radius: float) → Tuple[float, float]

Method with class-specific logic to figure out how to resize the monomer given the final size of its text label. Args are the text label’s size; returns size of the smallest monomer that properly contains the text.

setupTextLabel()

Updates the geometry of the monomer and monomer label in order to prevent the label text from overflowing the monomer shape.

setShape() → None

Set the shape and/or bounding box of the monomer. Must be implemented by inheriting classes for them to be rendered in the scene

class schrodinger.protein.helm.helm_renderer.AminoAcidMonomerBase(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

Bases: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin, PyQt6.QtWidgets.QGraphicsRectItem

Item representing an amino acid’s position and graphical details in the scene

setShape()

Set the size of the monomer rectangle

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DEFAULT_X_RADIUS = 12.5

DEFAULT_Y_RADIUS = 12.5

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

MAGNIFY_FACTOR = 1.0

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

brush(self) → QBrush

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getLabelText() → str

Get the text to be displayed in the monomer’s label.

If the assigned name is too long, truncate it and add an ellipsis.

getMonomerResizingProposal(text_x_radius: float, text_y_radius: float) → Tuple[float, float]

Method with class-specific logic to figure out how to resize the monomer given the final size of its text label. Args are the text label’s size; returns size of the smallest monomer that properly contains the text.

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

rect(self) → QRectF

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setBrush(self, brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient])

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRect(self, rect: QRectF)

setRect(self, ax: float, ay: float, w: float, h: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup()

Initialize the current monomer

setupTextLabel()

Updates the geometry of the monomer and monomer label in order to prevent the label text from overflowing the monomer shape.

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.StandardAminoAcidMonomerItem(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

Bases: schrodinger.protein.helm.helm_renderer.AminoAcidMonomerBase

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DEFAULT_X_RADIUS = 12.5

DEFAULT_Y_RADIUS = 12.5

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

MAGNIFY_FACTOR = 1.0

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

brush(self) → QBrush

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getLabelText() → str

Get the text to be displayed in the monomer’s label.

If the assigned name is too long, truncate it and add an ellipsis.

getMonomerResizingProposal(text_x_radius: float, text_y_radius: float) → Tuple[float, float]

Method with class-specific logic to figure out how to resize the monomer given the final size of its text label. Args are the text label’s size; returns size of the smallest monomer that properly contains the text.

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

rect(self) → QRectF

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setBrush(self, brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient])

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRect(self, rect: QRectF)

setRect(self, ax: float, ay: float, w: float, h: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setShape()

Set the size of the monomer rectangle

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup()

Initialize the current monomer

setupTextLabel()

Updates the geometry of the monomer and monomer label in order to prevent the label text from overflowing the monomer shape.

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.DAminoAcidMonomerItem(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

Bases: schrodinger.protein.helm.helm_renderer.AminoAcidMonomerBase

DEFAULT_X_RADIUS = 16.0

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DEFAULT_Y_RADIUS = 12.5

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

MAGNIFY_FACTOR = 1.0

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

brush(self) → QBrush

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getLabelText() → str

Get the text to be displayed in the monomer’s label.

If the assigned name is too long, truncate it and add an ellipsis.

getMonomerResizingProposal(text_x_radius: float, text_y_radius: float) → Tuple[float, float]

Method with class-specific logic to figure out how to resize the monomer given the final size of its text label. Args are the text label’s size; returns size of the smallest monomer that properly contains the text.

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

rect(self) → QRectF

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setBrush(self, brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient])

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRect(self, rect: QRectF)

setRect(self, ax: float, ay: float, w: float, h: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setShape()

Set the size of the monomer rectangle

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup()

Initialize the current monomer

setupTextLabel()

Updates the geometry of the monomer and monomer label in order to prevent the label text from overflowing the monomer shape.

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.OtherAminoAcidMonomerItem(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

Bases: schrodinger.protein.helm.helm_renderer.AminoAcidMonomerBase

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DEFAULT_X_RADIUS = 12.5

DEFAULT_Y_RADIUS = 12.5

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

MAGNIFY_FACTOR = 1.0

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

brush(self) → QBrush

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getLabelText() → str

Get the text to be displayed in the monomer’s label.

If the assigned name is too long, truncate it and add an ellipsis.

getMonomerResizingProposal(text_x_radius: float, text_y_radius: float) → Tuple[float, float]

Method with class-specific logic to figure out how to resize the monomer given the final size of its text label. Args are the text label’s size; returns size of the smallest monomer that properly contains the text.

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

rect(self) → QRectF

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setBrush(self, brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient])

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRect(self, rect: QRectF)

setRect(self, ax: float, ay: float, w: float, h: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setShape()

Set the size of the monomer rectangle

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup()

Initialize the current monomer

setupTextLabel()

Updates the geometry of the monomer and monomer label in order to prevent the label text from overflowing the monomer shape.

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.BBPhosphateMonomerBase(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

Bases: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin, PyQt6.QtWidgets.QGraphicsEllipseItem

Item representing a nucleic acid backbone phosphate group’s position and graphical details in the scene

MAGNIFY_FACTOR = 1.05

getMonomerResizingProposal(text_x_radius: float, text_y_radius: float) → Tuple[float, float]

Compute the size of the smallest monomer GraphicsItem that can fit the text label, given that the monomer is ellipse-shaped.

setShape()

Set the size of the monomer ellipse

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DEFAULT_X_RADIUS = 12.5

DEFAULT_Y_RADIUS = 12.5

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

brush(self) → QBrush

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getLabelText() → str

Get the text to be displayed in the monomer’s label.

If the assigned name is too long, truncate it and add an ellipsis.

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

rect(self) → QRectF

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setBrush(self, brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient])

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRect(self, rect: QRectF)

setRect(self, ax: float, ay: float, w: float, h: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setSpanAngle(self, angle: int)

setStartAngle(self, angle: int)

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup()

Initialize the current monomer

setupTextLabel()

Updates the geometry of the monomer and monomer label in order to prevent the label text from overflowing the monomer shape.

shape(self) → QPainterPath

show(self)

spanAngle(self) → int

stackBefore(self, sibling: QGraphicsItem)

startAngle(self) → int

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.BBStandardPhosphateMonomerItem(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

Bases: schrodinger.protein.helm.helm_renderer.BBPhosphateMonomerBase

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DEFAULT_X_RADIUS = 12.5

DEFAULT_Y_RADIUS = 12.5

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

MAGNIFY_FACTOR = 1.05

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

brush(self) → QBrush

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getLabelText() → str

Get the text to be displayed in the monomer’s label.

If the assigned name is too long, truncate it and add an ellipsis.

getMonomerResizingProposal(text_x_radius: float, text_y_radius: float) → Tuple[float, float]

Compute the size of the smallest monomer GraphicsItem that can fit the text label, given that the monomer is ellipse-shaped.

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

rect(self) → QRectF

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setBrush(self, brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient])

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRect(self, rect: QRectF)

setRect(self, ax: float, ay: float, w: float, h: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setShape()

Set the size of the monomer ellipse

setSpanAngle(self, angle: int)

setStartAngle(self, angle: int)

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup()

Initialize the current monomer

setupTextLabel()

Updates the geometry of the monomer and monomer label in order to prevent the label text from overflowing the monomer shape.

shape(self) → QPainterPath

show(self)

spanAngle(self) → int

stackBefore(self, sibling: QGraphicsItem)

startAngle(self) → int

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.BBModifiedPhosphateMonomerItem(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

Bases: schrodinger.protein.helm.helm_renderer.BBPhosphateMonomerBase

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DEFAULT_X_RADIUS = 12.5

DEFAULT_Y_RADIUS = 12.5

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

MAGNIFY_FACTOR = 1.05

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

brush(self) → QBrush

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getLabelText() → str

Get the text to be displayed in the monomer’s label.

If the assigned name is too long, truncate it and add an ellipsis.

getMonomerResizingProposal(text_x_radius: float, text_y_radius: float) → Tuple[float, float]

Compute the size of the smallest monomer GraphicsItem that can fit the text label, given that the monomer is ellipse-shaped.

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

rect(self) → QRectF

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setBrush(self, brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient])

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRect(self, rect: QRectF)

setRect(self, ax: float, ay: float, w: float, h: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setShape()

Set the size of the monomer ellipse

setSpanAngle(self, angle: int)

setStartAngle(self, angle: int)

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup()

Initialize the current monomer

setupTextLabel()

Updates the geometry of the monomer and monomer label in order to prevent the label text from overflowing the monomer shape.

shape(self) → QPainterPath

show(self)

spanAngle(self) → int

stackBefore(self, sibling: QGraphicsItem)

startAngle(self) → int

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.BBSugarMonomerBase(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

Bases: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin, PyQt6.QtWidgets.QGraphicsRectItem

Item representing a nucleic acid backbone sugar group’s position and graphical details in the scene. Used for both ribose and deoxyribose.

setShape()

Set the size of the monomer rectangle

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DEFAULT_X_RADIUS = 12.5

DEFAULT_Y_RADIUS = 12.5

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

MAGNIFY_FACTOR = 1.0

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

brush(self) → QBrush

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getLabelText() → str

Get the text to be displayed in the monomer’s label.

If the assigned name is too long, truncate it and add an ellipsis.

getMonomerResizingProposal(text_x_radius: float, text_y_radius: float) → Tuple[float, float]

Method with class-specific logic to figure out how to resize the monomer given the final size of its text label. Args are the text label’s size; returns size of the smallest monomer that properly contains the text.

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

rect(self) → QRectF

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setBrush(self, brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient])

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRect(self, rect: QRectF)

setRect(self, ax: float, ay: float, w: float, h: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup()

Initialize the current monomer

setupTextLabel()

Updates the geometry of the monomer and monomer label in order to prevent the label text from overflowing the monomer shape.

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.BBStandardSugarMonomerItem(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

Bases: schrodinger.protein.helm.helm_renderer.BBSugarMonomerBase

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DEFAULT_X_RADIUS = 12.5

DEFAULT_Y_RADIUS = 12.5

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

MAGNIFY_FACTOR = 1.0

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

brush(self) → QBrush

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getLabelText() → str

Get the text to be displayed in the monomer’s label.

If the assigned name is too long, truncate it and add an ellipsis.

getMonomerResizingProposal(text_x_radius: float, text_y_radius: float) → Tuple[float, float]

Method with class-specific logic to figure out how to resize the monomer given the final size of its text label. Args are the text label’s size; returns size of the smallest monomer that properly contains the text.

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

rect(self) → QRectF

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setBrush(self, brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient])

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRect(self, rect: QRectF)

setRect(self, ax: float, ay: float, w: float, h: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setShape()

Set the size of the monomer rectangle

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup()

Initialize the current monomer

setupTextLabel()

Updates the geometry of the monomer and monomer label in order to prevent the label text from overflowing the monomer shape.

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.BBModifiedSugarMonomerItem(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

Bases: schrodinger.protein.helm.helm_renderer.BBSugarMonomerBase

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DEFAULT_X_RADIUS = 12.5

DEFAULT_Y_RADIUS = 12.5

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

MAGNIFY_FACTOR = 1.0

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

brush(self) → QBrush

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getLabelText() → str

Get the text to be displayed in the monomer’s label.

If the assigned name is too long, truncate it and add an ellipsis.

getMonomerResizingProposal(text_x_radius: float, text_y_radius: float) → Tuple[float, float]

Method with class-specific logic to figure out how to resize the monomer given the final size of its text label. Args are the text label’s size; returns size of the smallest monomer that properly contains the text.

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

rect(self) → QRectF

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setBrush(self, brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient])

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRect(self, rect: QRectF)

setRect(self, ax: float, ay: float, w: float, h: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setShape()

Set the size of the monomer rectangle

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup()

Initialize the current monomer

setupTextLabel()

Updates the geometry of the monomer and monomer label in order to prevent the label text from overflowing the monomer shape.

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.NABaseMonomerBase(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

Bases: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin, PyQt6.QtWidgets.QGraphicsPolygonItem

Item representing a nucleobase’s position and graphical details in the scene

MAGNIFY_FACTOR = 1.15

getMonomerResizingProposal(text_x_radius: float, text_y_radius: float) → Tuple[float, float]

Compute the size of the smallest monomer GraphicsItem that can fit the text label, given that the monomer is diamond-shaped.

getPolygonVertices() → List[PyQt6.QtCore.QPointF]

Get the polygon vertices to create the required diamond shape

Returns

A list of vertices in clockwise order

setShape()

Set the size and vertices of the monomer item diamond

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DEFAULT_X_RADIUS = 12.5

DEFAULT_Y_RADIUS = 12.5

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

brush(self) → QBrush

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

fillRule(self) → Qt.FillRule

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getLabelText() → str

Get the text to be displayed in the monomer’s label.

If the assigned name is too long, truncate it and add an ellipsis.

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

polygon(self) → QPolygonF

pos(self) → QPointF

prepareGeometryChange(self)

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setBrush(self, brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient])

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFillRule(self, rule: Qt.FillRule)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPolygon(self, polygon: QPolygonF)

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup()

Initialize the current monomer

setupTextLabel()

Updates the geometry of the monomer and monomer label in order to prevent the label text from overflowing the monomer shape.

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.NAStandardBaseMonomerItem(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

Bases: schrodinger.protein.helm.helm_renderer.NABaseMonomerBase

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DEFAULT_X_RADIUS = 12.5

DEFAULT_Y_RADIUS = 12.5

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

MAGNIFY_FACTOR = 1.15

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

brush(self) → QBrush

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

fillRule(self) → Qt.FillRule

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getLabelText() → str

Get the text to be displayed in the monomer’s label.

If the assigned name is too long, truncate it and add an ellipsis.

getMonomerResizingProposal(text_x_radius: float, text_y_radius: float) → Tuple[float, float]

Compute the size of the smallest monomer GraphicsItem that can fit the text label, given that the monomer is diamond-shaped.

getPolygonVertices() → List[PyQt6.QtCore.QPointF]

Get the polygon vertices to create the required diamond shape

Returns

A list of vertices in clockwise order

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

polygon(self) → QPolygonF

pos(self) → QPointF

prepareGeometryChange(self)

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setBrush(self, brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient])

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFillRule(self, rule: Qt.FillRule)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPolygon(self, polygon: QPolygonF)

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setShape()

Set the size and vertices of the monomer item diamond

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup()

Initialize the current monomer

setupTextLabel()

Updates the geometry of the monomer and monomer label in order to prevent the label text from overflowing the monomer shape.

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.NAUnnaturalBaseMonomerItem(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

Bases: schrodinger.protein.helm.helm_renderer.NABaseMonomerBase

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DEFAULT_X_RADIUS = 12.5

DEFAULT_Y_RADIUS = 12.5

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

MAGNIFY_FACTOR = 1.15

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

brush(self) → QBrush

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

fillRule(self) → Qt.FillRule

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getLabelText() → str

Get the text to be displayed in the monomer’s label.

If the assigned name is too long, truncate it and add an ellipsis.

getMonomerResizingProposal(text_x_radius: float, text_y_radius: float) → Tuple[float, float]

Compute the size of the smallest monomer GraphicsItem that can fit the text label, given that the monomer is diamond-shaped.

getPolygonVertices() → List[PyQt6.QtCore.QPointF]

Get the polygon vertices to create the required diamond shape

Returns

A list of vertices in clockwise order

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

polygon(self) → QPolygonF

pos(self) → QPointF

prepareGeometryChange(self)

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setBrush(self, brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient])

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFillRule(self, rule: Qt.FillRule)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPolygon(self, polygon: QPolygonF)

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setShape()

Set the size and vertices of the monomer item diamond

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup()

Initialize the current monomer

setupTextLabel()

Updates the geometry of the monomer and monomer label in order to prevent the label text from overflowing the monomer shape.

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.ChemMonomerItem(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

Bases: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin, PyQt6.QtWidgets.QGraphicsRectItem

Catchall class for non-peptide, non-nucleotide elements.

setShape()

Set the size of the monomer rectangle

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DEFAULT_X_RADIUS = 12.5

DEFAULT_Y_RADIUS = 12.5

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

MAGNIFY_FACTOR = 1.0

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

brush(self) → QBrush

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getLabelText() → str

Get the text to be displayed in the monomer’s label.

If the assigned name is too long, truncate it and add an ellipsis.

getMonomerResizingProposal(text_x_radius: float, text_y_radius: float) → Tuple[float, float]

Method with class-specific logic to figure out how to resize the monomer given the final size of its text label. Args are the text label’s size; returns size of the smallest monomer that properly contains the text.

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

rect(self) → QRectF

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setBrush(self, brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient])

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRect(self, rect: QRectF)

setRect(self, ax: float, ay: float, w: float, h: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup()

Initialize the current monomer

setupTextLabel()

Updates the geometry of the monomer and monomer label in order to prevent the label text from overflowing the monomer shape.

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

schrodinger.protein.helm.helm_renderer.monomer_item_factory(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomer) → schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin

Implement logic specifying different graphical styles (implemented by each child class) for a monomer.

Parameters

monomer – Monomer properties, determined by HelmScene.getMonomerData.

Returns

Graphics item to be added to the current QtWidgets.QGraphicsScene.

class schrodinger.protein.helm.helm_renderer.HelmConnector(start: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin, end: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin, is_cyclic: bool = True)

Bases: object

start: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin

end: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin

is_cyclic: bool = True

getMonomers() → Tuple[schrodinger.protein.helm.helm_renderer.HelmMonomer, schrodinger.protein.helm.helm_renderer.HelmMonomer]

Convenience function returning a 2-tuple of the (start, end) monomer definitions.

getMonomerTypes() → Tuple[schrodinger.protein.helm._helm_parser.PolymerType, schrodinger.protein.helm._helm_parser.PolymerType]

Convenience function returning a 2-tuple of the PolymerType of the start and end monomers.

property has_branch: bool

property is_disulfide_bridge: bool

property polymer_type: schrodinger.protein.helm._helm_parser.PolymerType

Determine the PolymerType of the connector, based on the PolymerType of the two monomers it connects.

__init__(start: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin, end: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin, is_cyclic: bool = True) → None

class schrodinger.protein.helm.helm_renderer.HelmConnectorItemMixin(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

Bases: object

Base class for all connectors.

__init__(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

getStartPos() → PyQt6.QtCore.QPointF

getEndPos() → PyQt6.QtCore.QPointF

setup() → None

class schrodinger.protein.helm.helm_renderer.LineHelmConnectorItem(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

Bases: schrodinger.protein.helm.helm_renderer.HelmConnectorItemMixin, PyQt6.QtWidgets.QGraphicsLineItem

Base class for all connectors rendered as a straight line.

setup() → None

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getEndPos() → PyQt6.QtCore.QPointF

getStartPos() → PyQt6.QtCore.QPointF

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

line(self) → QLineF

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setLine(self, line: QLineF)

setLine(self, x1: float, y1: float, x2: float, y2: float) → None

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.PolylineHelmConnectorItem(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

Bases: schrodinger.protein.helm.helm_renderer.HelmConnectorItemMixin, PyQt6.QtWidgets.QGraphicsPathItem

Base class for all connectors rendered as a polyline (”／‾＼”).

setup() → None

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

brush(self) → QBrush

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getEndPos() → PyQt6.QtCore.QPointF

getStartPos() → PyQt6.QtCore.QPointF

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

path(self) → QPainterPath

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setBrush(self, brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient])

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPath(self, path: QPainterPath)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.ArrowheadConnectorMixin

Bases: object

Mixin for adding arrowheads to the start or end of a HelmConnectorItemMixin graphics item.

add_arrowhead(pos: PyQt6.QtCore.QPointF) → PyQt6.QtWidgets.QAbstractGraphicsShapeItem

getArrowheadPos(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin, other_monomer: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin) → PyQt6.QtCore.QPointF

Logic for determining where the arrowhead should be attached to monomer, given that the other end of the connector is attached to other_monomer. Returns a position in the global QGraphicsScene coordinate system.

class schrodinger.protein.helm.helm_renderer.AALinearConnectorItem(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

Bases: schrodinger.protein.helm.helm_renderer.LineHelmConnectorItem

Graphics Item representing a non-branching connector between two amino acids.

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getEndPos() → PyQt6.QtCore.QPointF

getStartPos() → PyQt6.QtCore.QPointF

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

line(self) → QLineF

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setLine(self, line: QLineF)

setLine(self, x1: float, y1: float, x2: float, y2: float) → None

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup() → None

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.AABranchingConnectorItem(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

Bases: schrodinger.protein.helm.helm_renderer.ArrowheadConnectorMixin, schrodinger.protein.helm.helm_renderer.LineHelmConnectorItem

Graphics Item representing a branching connector between two amino acids.

__init__(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

getStartPos() → PyQt6.QtCore.QPointF

getEndPos() → PyQt6.QtCore.QPointF

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

add_arrowhead(pos: PyQt6.QtCore.QPointF) → PyQt6.QtWidgets.QAbstractGraphicsShapeItem

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getArrowheadPos(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin, other_monomer: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin) → PyQt6.QtCore.QPointF

Logic for determining where the arrowhead should be attached to monomer, given that the other end of the connector is attached to other_monomer. Returns a position in the global QGraphicsScene coordinate system.

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

line(self) → QLineF

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setLine(self, line: QLineF)

setLine(self, x1: float, y1: float, x2: float, y2: float) → None

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup() → None

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.DisulfideConnectorMixin(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

Bases: schrodinger.protein.helm.helm_renderer.ArrowheadConnectorMixin

Mixin for representing disulfide bridges.

__init__(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

getStartPos() → PyQt6.QtCore.QPointF

getEndPos() → PyQt6.QtCore.QPointF

add_arrowhead(pos: PyQt6.QtCore.QPointF) → PyQt6.QtWidgets.QAbstractGraphicsShapeItem

getArrowheadPos(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin, other_monomer: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin) → PyQt6.QtCore.QPointF

Logic for determining where the arrowhead should be attached to monomer, given that the other end of the connector is attached to other_monomer. Returns a position in the global QGraphicsScene coordinate system.

class schrodinger.protein.helm.helm_renderer.DisulfideLinearConnectorItem(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

Bases: schrodinger.protein.helm.helm_renderer.DisulfideConnectorMixin, schrodinger.protein.helm.helm_renderer.PolylineHelmConnectorItem

Graphics Item representing disulfide bridges between two amino acids that have been laid out in a linear arrangement.

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

add_arrowhead(pos: PyQt6.QtCore.QPointF) → PyQt6.QtWidgets.QAbstractGraphicsShapeItem

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

brush(self) → QBrush

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getArrowheadPos(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin, other_monomer: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin) → PyQt6.QtCore.QPointF

Logic for determining where the arrowhead should be attached to monomer, given that the other end of the connector is attached to other_monomer. Returns a position in the global QGraphicsScene coordinate system.

getEndPos() → PyQt6.QtCore.QPointF

getStartPos() → PyQt6.QtCore.QPointF

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

path(self) → QPainterPath

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setBrush(self, brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient])

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPath(self, path: QPainterPath)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup() → None

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.DisulfideCyclicConnectorItem(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

Bases: schrodinger.protein.helm.helm_renderer.DisulfideConnectorMixin, schrodinger.protein.helm.helm_renderer.LineHelmConnectorItem

Graphics Item representing disulfide bridges between two amino acids that have been laid out in a cyclic arrangement, in which the bridge closes the cycle.

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

add_arrowhead(pos: PyQt6.QtCore.QPointF) → PyQt6.QtWidgets.QAbstractGraphicsShapeItem

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getArrowheadPos(monomer: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin, other_monomer: schrodinger.protein.helm.helm_renderer.HelmMonomerItemMixin) → PyQt6.QtCore.QPointF

Logic for determining where the arrowhead should be attached to monomer, given that the other end of the connector is attached to other_monomer. Returns a position in the global QGraphicsScene coordinate system.

getEndPos() → PyQt6.QtCore.QPointF

getStartPos() → PyQt6.QtCore.QPointF

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

line(self) → QLineF

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setLine(self, line: QLineF)

setLine(self, x1: float, y1: float, x2: float, y2: float) → None

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup() → None

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.NABackboneConnectorItem(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

Bases: schrodinger.protein.helm.helm_renderer.LineHelmConnectorItem

Graphics Item representing backbone connections between nucleotides.

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getEndPos() → PyQt6.QtCore.QPointF

getStartPos() → PyQt6.QtCore.QPointF

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

line(self) → QLineF

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setLine(self, line: QLineF)

setLine(self, x1: float, y1: float, x2: float, y2: float) → None

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup() → None

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.NABackboneBaseConnectorItem(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

Bases: schrodinger.protein.helm.helm_renderer.LineHelmConnectorItem

Graphics Item representing a connection between a nucleotide backbone and base.

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getEndPos() → PyQt6.QtCore.QPointF

getStartPos() → PyQt6.QtCore.QPointF

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

line(self) → QLineF

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setLine(self, line: QLineF)

setLine(self, x1: float, y1: float, x2: float, y2: float) → None

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup() → None

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.NABaseConnectorItem(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

Bases: schrodinger.protein.helm.helm_renderer.LineHelmConnectorItem

Graphics Item representing a connection between two base pairs.

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getEndPos() → PyQt6.QtCore.QPointF

getStartPos() → PyQt6.QtCore.QPointF

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

line(self) → QLineF

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setLine(self, line: QLineF)

setLine(self, x1: float, y1: float, x2: float, y2: float) → None

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup() → None

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.ChemConnectorItem(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

Bases: schrodinger.protein.helm.helm_renderer.LineHelmConnectorItem

Catchall class for all connectors where one or both endpoints is a Chem (non-peptide, non-nucleotide) element.

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

__init__(connector: schrodinger.protein.helm.helm_renderer.HelmConnector, parent=None)

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

cacheMode(self) → QGraphicsItem.CacheMode

childItems(self) → List[QGraphicsItem]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

data(self, key: int) → Any

deviceTransform(self, viewportTransform: QTransform) → QTransform

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

effectiveOpacity(self) → float

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

filtersChildEvents(self) → bool

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

getEndPos() → PyQt6.QtCore.QPointF

getStartPos() → PyQt6.QtCore.QPointF

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWindow(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

line(self) → QLineF

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

opacity(self) → float

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pen(self) → QPen

pos(self) → QPointF

prepareGeometryChange(self)

removeSceneEventFilter(self, filterItem: QGraphicsItem)

resetTransform(self)

rotation(self) → float

scale(self) → float

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setLine(self, line: QLineF)

setLine(self, x1: float, y1: float, x2: float, y2: float) → None

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParentItem(self, parent: QGraphicsItem)

setPen(self, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient])

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

setup() → None

shape(self) → QPainterPath

show(self)

stackBefore(self, sibling: QGraphicsItem)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

y(self) → float

zValue(self) → float

schrodinger.protein.helm.helm_renderer.connector_item_factory(connector: schrodinger.protein.helm.helm_renderer.HelmConnector) → PyQt6.QtWidgets.QAbstractGraphicsShapeItem

Implement logic specifying different graphical styles (implemented by each child class) for a connector.

Parameters

connector – Connector properties, determined by HelmScene.getConnectorData.

Returns

Graphics item to be added to the current QtWidgets.QGraphicsScene.

class schrodinger.protein.helm.helm_renderer.HelmFallbackImage(entity_class: schrodinger.livedesign.entity_type.EntityClass)

Bases: PyQt6.QtSvgWidgets.QGraphicsSvgItem

GraphicsItem for the stock image (in .svg format) shown when the input polymer is too complex to display in detail, as measured by N_MONOMER_MAX

__init__(entity_class: schrodinger.livedesign.entity_type.EntityClass)

class CacheMode(value)

Bases: enum.Enum

An enumeration.

NoCache = 0

ItemCoordinateCache = 1

DeviceCoordinateCache = 2

DeviceCoordinateCache = 2

class GraphicsItemChange(value)

Bases: enum.Enum

An enumeration.

ItemPositionChange = 0

ItemVisibleChange = 2

ItemEnabledChange = 3

ItemSelectedChange = 4

ItemParentChange = 5

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemTransformChange = 8

ItemPositionHasChanged = 9

ItemTransformHasChanged = 10

ItemSceneChange = 11

ItemVisibleHasChanged = 12

ItemEnabledHasChanged = 13

ItemSelectedHasChanged = 14

ItemParentHasChanged = 15

ItemSceneHasChanged = 16

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemZValueChange = 23

ItemZValueHasChanged = 24

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemScenePositionHasChanged = 27

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

class GraphicsItemFlag(value)

Bases: enum.Flag

An enumeration.

ItemIsMovable = 1

ItemIsSelectable = 2

ItemIsFocusable = 4

ItemClipsToShape = 8

ItemClipsChildrenToShape = 16

ItemIgnoresTransformations = 32

ItemIgnoresParentOpacity = 64

ItemDoesntPropagateOpacityToChildren = 128

ItemStacksBehindParent = 256

ItemUsesExtendedStyleOption = 512

ItemHasNoContents = 1024

ItemSendsGeometryChanges = 2048

ItemAcceptsInputMethod = 4096

ItemNegativeZStacksBehindParent = 8192

ItemIsPanel = 16384

ItemSendsScenePositionChanges = 65536

ItemContainsChildrenInShape = 524288

ItemAcceptsInputMethod = 4096

ItemChildAddedChange = 6

ItemChildRemovedChange = 7

ItemClipsChildrenToShape = 16

ItemClipsToShape = 8

ItemContainsChildrenInShape = 524288

ItemCoordinateCache = 1

ItemCursorChange = 17

ItemCursorHasChanged = 18

ItemDoesntPropagateOpacityToChildren = 128

ItemEnabledChange = 3

ItemEnabledHasChanged = 13

ItemFlagsChange = 21

ItemFlagsHaveChanged = 22

ItemHasNoContents = 1024

ItemIgnoresParentOpacity = 64

ItemIgnoresTransformations = 32

ItemIsFocusable = 4

ItemIsMovable = 1

ItemIsPanel = 16384

ItemIsSelectable = 2

ItemNegativeZStacksBehindParent = 8192

ItemOpacityChange = 25

ItemOpacityHasChanged = 26

ItemParentChange = 5

ItemParentHasChanged = 15

ItemPositionChange = 0

ItemPositionHasChanged = 9

ItemRotationChange = 28

ItemRotationHasChanged = 29

ItemScaleChange = 30

ItemScaleHasChanged = 31

ItemSceneChange = 11

ItemSceneHasChanged = 16

ItemScenePositionHasChanged = 27

ItemSelectedChange = 4

ItemSelectedHasChanged = 14

ItemSendsGeometryChanges = 2048

ItemSendsScenePositionChanges = 65536

ItemStacksBehindParent = 256

ItemToolTipChange = 19

ItemToolTipHasChanged = 20

ItemTransformChange = 8

ItemTransformHasChanged = 10

ItemTransformOriginPointChange = 32

ItemTransformOriginPointHasChanged = 33

ItemUsesExtendedStyleOption = 512

ItemVisibleChange = 2

ItemVisibleHasChanged = 12

ItemZValueChange = 23

ItemZValueHasChanged = 24

NoCache = 0

NonModal = 0

PanelModal = 1

class PanelModality(value)

Bases: enum.Enum

An enumeration.

NonModal = 0

PanelModal = 1

SceneModal = 2

SceneModal = 2

Type = 1

UserType = 65536

acceptDrops(self) → bool

acceptHoverEvents(self) → bool

acceptTouchEvents(self) → bool

acceptedMouseButtons(self) → Qt.MouseButton

advance(self, phase: int)

blockSignals(self, b: bool) → bool

boundingRect(self) → QRectF

boundingRegion(self, itemToDeviceTransform: QTransform) → QRegion

boundingRegionGranularity(self) → float

cacheMode(self) → QGraphicsItem.CacheMode

childEvent(self, a0: QChildEvent)

childItems(self) → List[QGraphicsItem]

children(self) → List[QObject]

childrenBoundingRect(self) → QRectF

clearFocus(self)

clipPath(self) → QPainterPath

collidesWithItem(self, other: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidesWithPath(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → bool

collidingItems(self, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

commonAncestorItem(self, other: QGraphicsItem) → QGraphicsItem

connectNotify(self, signal: QMetaMethod)

contains(self, point: QPointF) → bool

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

cursor(self) → QCursor

customEvent(self, a0: QEvent)

data(self, key: int) → Any

deleteLater(self)

destroyed

destroyed(self, object: typing.Optional[QObject] = None) [signal]

deviceTransform(self, viewportTransform: QTransform) → QTransform

disconnect(a0: QMetaObject.Connection) → bool

disconnect(self) → None

disconnectNotify(self, signal: QMetaMethod)

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

dumpObjectInfo(self)

dumpObjectTree(self)

dynamicPropertyNames(self) → List[QByteArray]

effectiveOpacity(self) → float

elementId(self) → str

enabledChanged

enabledChanged(self) [signal]

ensureVisible(self, rect: QRectF = QRectF(), xMargin: int = 50, yMargin: int = 50)

ensureVisible(self, x: float, y: float, w: float, h: float, xMargin: int = 50, yMargin: int = 50) → None

event(self, ev: QEvent) → bool

eventFilter(self, a0: QObject, a1: QEvent) → bool

filtersChildEvents(self) → bool

findChild(self, type: type, name: str = '', options: Qt.FindChildOption = Qt.FindChildrenRecursively) → QObject

findChild(self, types: Tuple, name: str = '', options: Qt.FindChildOption = Qt.FindChildrenRecursively) → QObject

findChildren(self, type: type, name: str = '', options: Qt.FindChildOption = Qt.FindChildrenRecursively) → List[QObject]

findChildren(self, types: Tuple, name: str = '', options: Qt.FindChildOption = Qt.FindChildrenRecursively) → List[QObject]

findChildren(self, type: type, re: QRegularExpression, options: Qt.FindChildOption = Qt.FindChildrenRecursively) → List[QObject]

findChildren(self, types: Tuple, re: QRegularExpression, options: Qt.FindChildOption = Qt.FindChildrenRecursively) → List[QObject]

flags(self) → QGraphicsItem.GraphicsItemFlag

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusOutEvent(self, event: QFocusEvent)

focusProxy(self) → QGraphicsItem

grabGesture(self, type: Qt.GestureType, flags: Qt.GestureFlag = Qt.GestureFlags())

grabKeyboard(self)

grabMouse(self)

graphicsEffect(self) → QGraphicsEffect

group(self) → QGraphicsItemGroup

hasCursor(self) → bool

hasFocus(self) → bool

hide(self)

hoverEnterEvent(self, event: QGraphicsSceneHoverEvent)

hoverLeaveEvent(self, event: QGraphicsSceneHoverEvent)

hoverMoveEvent(self, event: QGraphicsSceneHoverEvent)

inherits(self, classname: str) → bool

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installEventFilter(self, a0: QObject)

installSceneEventFilter(self, filterItem: QGraphicsItem)

isActive(self) → bool

isAncestorOf(self, child: QGraphicsItem) → bool

isBlockedByModalPanel(self) → Tuple[bool, QGraphicsItem]

isClipped(self) → bool

isEnabled(self) → bool

isObscured(self, rect: QRectF = QRectF()) → bool

isObscured(self, ax: float, ay: float, w: float, h: float) → bool

isObscuredBy(self, item: QGraphicsItem) → bool

isPanel(self) → bool

isSelected(self) → bool

isSignalConnected(self, signal: QMetaMethod) → bool

isUnderMouse(self) → bool

isVisible(self) → bool

isVisibleTo(self, parent: QGraphicsItem) → bool

isWidget(self) → bool

isWidgetType(self) → bool

isWindow(self) → bool

isWindowType(self) → bool

itemChange(self, change: QGraphicsItem.GraphicsItemChange, value: Any) → Any

itemTransform(self, other: QGraphicsItem) → Tuple[QTransform, bool]

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

killTimer(self, id: int)

mapFromItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapFromItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapFromItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromParent(self, point: QPointF) → QPointF

mapFromParent(self, rect: QRectF) → QPolygonF

mapFromParent(self, polygon: QPolygonF) → QPolygonF

mapFromParent(self, path: QPainterPath) → QPainterPath

mapFromParent(self, ax: float, ay: float) → QPointF

mapFromParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapFromScene(self, point: QPointF) → QPointF

mapFromScene(self, rect: QRectF) → QPolygonF

mapFromScene(self, polygon: QPolygonF) → QPolygonF

mapFromScene(self, path: QPainterPath) → QPainterPath

mapFromScene(self, ax: float, ay: float) → QPointF

mapFromScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapRectFromItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectFromItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromParent(self, rect: QRectF) → QRectF

mapRectFromParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectFromScene(self, rect: QRectF) → QRectF

mapRectFromScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToItem(self, item: QGraphicsItem, rect: QRectF) → QRectF

mapRectToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToParent(self, rect: QRectF) → QRectF

mapRectToParent(self, ax: float, ay: float, w: float, h: float) → QRectF

mapRectToScene(self, rect: QRectF) → QRectF

mapRectToScene(self, ax: float, ay: float, w: float, h: float) → QRectF

mapToItem(self, item: QGraphicsItem, point: QPointF) → QPointF

mapToItem(self, item: QGraphicsItem, rect: QRectF) → QPolygonF

mapToItem(self, item: QGraphicsItem, polygon: QPolygonF) → QPolygonF

mapToItem(self, item: QGraphicsItem, path: QPainterPath) → QPainterPath

mapToItem(self, item: QGraphicsItem, ax: float, ay: float) → QPointF

mapToItem(self, item: QGraphicsItem, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToParent(self, point: QPointF) → QPointF

mapToParent(self, rect: QRectF) → QPolygonF

mapToParent(self, polygon: QPolygonF) → QPolygonF

mapToParent(self, path: QPainterPath) → QPainterPath

mapToParent(self, ax: float, ay: float) → QPointF

mapToParent(self, ax: float, ay: float, w: float, h: float) → QPolygonF

mapToScene(self, point: QPointF) → QPointF

mapToScene(self, rect: QRectF) → QPolygonF

mapToScene(self, polygon: QPolygonF) → QPolygonF

mapToScene(self, path: QPainterPath) → QPainterPath

mapToScene(self, ax: float, ay: float) → QPointF

mapToScene(self, ax: float, ay: float, w: float, h: float) → QPolygonF

maximumCacheSize(self) → QSize

metaObject(self) → QMetaObject

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveBy(self, dx: float, dy: float)

moveToThread(self, thread: QThread)

objectName(self) → str

objectNameChanged

objectNameChanged(self, objectName: str) [signal]

opacity(self) → float

opacityChanged

opacityChanged(self) [signal]

opaqueArea(self) → QPainterPath

paint(self, painter: QPainter, option: QStyleOptionGraphicsItem, widget: typing.Optional[QWidget] = None)

panel(self) → QGraphicsItem

panelModality(self) → QGraphicsItem.PanelModality

parent(self) → QObject

parentChanged

parentChanged(self) [signal]

parentItem(self) → QGraphicsItem

parentObject(self) → QGraphicsObject

parentWidget(self) → QGraphicsWidget

pos(self) → QPointF

prepareGeometryChange(self)

property(self, name: str) → Any

pyqtConfigure(...)

Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

receivers(self, signal: PYQT_SIGNAL) → int

removeEventFilter(self, a0: QObject)

removeSceneEventFilter(self, filterItem: QGraphicsItem)

renderer(self) → QSvgRenderer

resetTransform(self)

rotation(self) → float

rotationChanged

rotationChanged(self) [signal]

scale(self) → float

scaleChanged

scaleChanged(self) [signal]

scene(self) → QGraphicsScene

sceneBoundingRect(self) → QRectF

sceneEvent(self, event: QEvent) → bool

sceneEventFilter(self, watched: QGraphicsItem, event: QEvent) → bool

scenePos(self) → QPointF

sceneTransform(self) → QTransform

scroll(self, dx: float, dy: float, rect: QRectF = QRectF())

sender(self) → QObject

senderSignalIndex(self) → int

setAcceptDrops(self, on: bool)

setAcceptHoverEvents(self, enabled: bool)

setAcceptTouchEvents(self, enabled: bool)

setAcceptedMouseButtons(self, buttons: Qt.MouseButton)

setActive(self, active: bool)

setBoundingRegionGranularity(self, granularity: float)

setCacheMode(self, mode: QGraphicsItem.CacheMode, logicalCacheSize: QSize = QSize())

setCursor(self, cursor: Union[QCursor, Qt.CursorShape])

setData(self, key: int, value: Any)

setElementId(self, id: str)

setEnabled(self, enabled: bool)

setFiltersChildEvents(self, enabled: bool)

setFlag(self, flag: QGraphicsItem.GraphicsItemFlag, enabled: bool = True)

setFlags(self, flags: QGraphicsItem.GraphicsItemFlag)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusProxy(self, item: QGraphicsItem)

setGraphicsEffect(self, effect: QGraphicsEffect)

setGroup(self, group: QGraphicsItemGroup)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setMaximumCacheSize(self, size: QSize)

setObjectName(self, name: str)

setOpacity(self, opacity: float)

setPanelModality(self, panelModality: QGraphicsItem.PanelModality)

setParent(self, a0: QObject)

setParentItem(self, parent: QGraphicsItem)

setPos(self, pos: QPointF)

setPos(self, ax: float, ay: float) → None

setProperty(self, name: str, value: Any) → bool

setRotation(self, angle: float)

setScale(self, scale: float)

setSelected(self, selected: bool)

setSharedRenderer(self, renderer: QSvgRenderer)

setToolTip(self, toolTip: str)

setTransform(self, matrix: QTransform, combine: bool = False)

setTransformOriginPoint(self, origin: QPointF)

setTransformOriginPoint(self, ax: float, ay: float) → None

setTransformations(self, transformations: Iterable[QGraphicsTransform])

setVisible(self, visible: bool)

setX(self, x: float)

setY(self, y: float)

setZValue(self, z: float)

shape(self) → QPainterPath

show(self)

signalsBlocked(self) → bool

stackBefore(self, sibling: QGraphicsItem)

startTimer(self, interval: int, timerType: Qt.TimerType = Qt.CoarseTimer) → int

staticMetaObject = <PyQt6.QtCore.QMetaObject object>

thread(self) → QThread

timerEvent(self, a0: QTimerEvent)

toGraphicsObject(self) → QGraphicsObject

toolTip(self) → str

topLevelItem(self) → QGraphicsItem

topLevelWidget(self) → QGraphicsWidget

tr(sourceText: str, disambiguation: typing.Optional[str] = None, n: int = - 1) → str

transform(self) → QTransform

transformOriginPoint(self) → QPointF

transformations(self) → List[QGraphicsTransform]

type(self) → int

ungrabGesture(self, type: Qt.GestureType)

ungrabKeyboard(self)

ungrabMouse(self)

unsetCursor(self)

update(self, rect: QRectF = QRectF())

update(self, ax: float, ay: float, width: float, height: float) → None

updateMicroFocus(self)

visibleChanged

visibleChanged(self) [signal]

wheelEvent(self, event: QGraphicsSceneWheelEvent)

window(self) → QGraphicsWidget

x(self) → float

xChanged

xChanged(self) [signal]

y(self) → float

yChanged

yChanged(self) [signal]

zChanged

zChanged(self) [signal]

zValue(self) → float

class schrodinger.protein.helm.helm_renderer.HelmScene

Bases: PyQt6.QtWidgets.QGraphicsScene

Scene object for rendering a helm molecule

__init__()

setHelmMolecule(helm_mol: rdkit.Chem.rdchem.Mol, fallback_entity: Optional[schrodinger.livedesign.entity_type.EntityClass])

Set the helm molecule to render and add bond and monomer representations to the scene.

Parameters

• helm_mol – Helm data represented by a 2D coarse-grained molecule.

• fallback_entity – entity class to use for a fallback image

getMonomerData(monomer: rdkit.Chem.rdchem.Atom) → Tuple[int, schrodinger.protein.helm.helm_renderer.HelmMonomer]

Compute the properties of monomer needed for the logic that determines its graphical representation: the HelmMonomerItemMixin child class that monomer_item_factory should dispatch to.

Parameters

monomer – Representation of the monomer in the input rdkit molecule.

Returns

2-tuple of the index of the monomer in the conformer object and a HelmMonomer object with the needed properties.

getConnectorData(bond: rdkit.Chem.rdchem.Bond, monomer_lookup: dict) → schrodinger.protein.helm.helm_renderer.HelmConnector

Compute the properties of bond needed for the logic that determines its graphical representation: the HelmConnectorItemMixin child class that connector_item_factory should dispatch to.

Parameters

• bond – Representation of the connector in the input rdkit molecule.

• monomer_lookup – A dict mapping the monomer’s index in the conformer to its HelmMonomer representation.

Returns

A HelmConnector object with the needed properties.

AllLayers = 65535

BackgroundLayer = 2

BspTreeIndex = 0

ForegroundLayer = 4

class ItemIndexMethod(value)

Bases: enum.Enum

An enumeration.

BspTreeIndex = 0

NoIndex = -1

ItemLayer = 1

NoIndex = -1

class SceneLayer(value)

Bases: enum.Flag

An enumeration.

ItemLayer = 1

BackgroundLayer = 2

ForegroundLayer = 4

AllLayers = 65535

activePanel(self) → QGraphicsItem

activeWindow(self) → QGraphicsWidget

addEllipse(self, rect: QRectF, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient] = QPen(), brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient] = QBrush()) → QGraphicsEllipseItem

addEllipse(self, x: float, y: float, w: float, h: float, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient] = QPen(), brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient] = QBrush()) → QGraphicsEllipseItem

addItem(self, item: QGraphicsItem)

addLine(self, line: QLineF, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient] = QPen()) → QGraphicsLineItem

addLine(self, x1: float, y1: float, x2: float, y2: float, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient] = QPen()) → QGraphicsLineItem

addPath(self, path: QPainterPath, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient] = QPen(), brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient] = QBrush()) → QGraphicsPathItem

addPixmap(self, pixmap: QPixmap) → QGraphicsPixmapItem

addPolygon(self, polygon: QPolygonF, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient] = QPen(), brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient] = QBrush()) → QGraphicsPolygonItem

addRect(self, rect: QRectF, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient] = QPen(), brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient] = QBrush()) → QGraphicsRectItem

addRect(self, x: float, y: float, w: float, h: float, pen: Union[QPen, QColor, Qt.GlobalColor, int, QGradient] = QPen(), brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient] = QBrush()) → QGraphicsRectItem

addSimpleText(self, text: str, font: QFont = QFont()) → QGraphicsSimpleTextItem

addText(self, text: str, font: QFont = QFont()) → QGraphicsTextItem

addWidget(self, widget: QWidget, flags: Qt.WindowType = Qt.WindowFlags()) → QGraphicsProxyWidget

advance(self)

backgroundBrush(self) → QBrush

blockSignals(self, b: bool) → bool

bspTreeDepth(self) → int

changed

changed(self, region: Iterable[QRectF]) [signal]

childEvent(self, a0: QChildEvent)

children(self) → List[QObject]

clear(self)

clearFocus(self)

clearSelection(self)

collidingItems(self, item: QGraphicsItem, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape) → List[QGraphicsItem]

connectNotify(self, signal: QMetaMethod)

contextMenuEvent(self, event: QGraphicsSceneContextMenuEvent)

createItemGroup(self, items: Iterable[QGraphicsItem]) → QGraphicsItemGroup

customEvent(self, a0: QEvent)

deleteLater(self)

destroyItemGroup(self, group: QGraphicsItemGroup)

destroyed

destroyed(self, object: typing.Optional[QObject] = None) [signal]

disconnect(a0: QMetaObject.Connection) → bool

disconnect(self) → None

disconnectNotify(self, signal: QMetaMethod)

dragEnterEvent(self, event: QGraphicsSceneDragDropEvent)

dragLeaveEvent(self, event: QGraphicsSceneDragDropEvent)

dragMoveEvent(self, event: QGraphicsSceneDragDropEvent)

drawBackground(self, painter: QPainter, rect: QRectF)

drawForeground(self, painter: QPainter, rect: QRectF)

dropEvent(self, event: QGraphicsSceneDragDropEvent)

dumpObjectInfo(self)

dumpObjectTree(self)

dynamicPropertyNames(self) → List[QByteArray]

event(self, event: QEvent) → bool

eventFilter(self, watched: QObject, event: QEvent) → bool

findChild(self, type: type, name: str = '', options: Qt.FindChildOption = Qt.FindChildrenRecursively) → QObject

findChild(self, types: Tuple, name: str = '', options: Qt.FindChildOption = Qt.FindChildrenRecursively) → QObject

findChildren(self, type: type, name: str = '', options: Qt.FindChildOption = Qt.FindChildrenRecursively) → List[QObject]

findChildren(self, types: Tuple, name: str = '', options: Qt.FindChildOption = Qt.FindChildrenRecursively) → List[QObject]

findChildren(self, type: type, re: QRegularExpression, options: Qt.FindChildOption = Qt.FindChildrenRecursively) → List[QObject]

findChildren(self, types: Tuple, re: QRegularExpression, options: Qt.FindChildOption = Qt.FindChildrenRecursively) → List[QObject]

focusInEvent(self, event: QFocusEvent)

focusItem(self) → QGraphicsItem

focusItemChanged

focusItemChanged(self, newFocus: QGraphicsItem, oldFocus: QGraphicsItem, reason: Qt.FocusReason) [signal]

focusNextPrevChild(self, next: bool) → bool

focusOnTouch(self) → bool

focusOutEvent(self, event: QFocusEvent)

font(self) → QFont

foregroundBrush(self) → QBrush

hasFocus(self) → bool

height(self) → float

helpEvent(self, event: QGraphicsSceneHelpEvent)

inherits(self, classname: str) → bool

inputMethodEvent(self, event: QInputMethodEvent)

inputMethodQuery(self, query: Qt.InputMethodQuery) → Any

installEventFilter(self, a0: QObject)

invalidate(self, rect: QRectF = QRectF(), layers: QGraphicsScene.SceneLayer = QGraphicsScene.AllLayers)

invalidate(self, x: float, y: float, w: float, h: float, layers: QGraphicsScene.SceneLayer = QGraphicsScene.AllLayers) → None

isActive(self) → bool

isSignalConnected(self, signal: QMetaMethod) → bool

isWidgetType(self) → bool

isWindowType(self) → bool

itemAt(self, pos: QPointF, deviceTransform: QTransform) → QGraphicsItem

itemAt(self, x: float, y: float, deviceTransform: QTransform) → QGraphicsItem

itemIndexMethod(self) → QGraphicsScene.ItemIndexMethod

items(self, order: Qt.SortOrder = Qt.DescendingOrder) → List[QGraphicsItem]

items(self, pos: QPointF, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape, order: Qt.SortOrder = Qt.DescendingOrder, deviceTransform: QTransform = QTransform()) → List[QGraphicsItem]

items(self, rect: QRectF, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape, order: Qt.SortOrder = Qt.DescendingOrder, deviceTransform: QTransform = QTransform()) → List[QGraphicsItem]

items(self, polygon: QPolygonF, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape, order: Qt.SortOrder = Qt.DescendingOrder, deviceTransform: QTransform = QTransform()) → List[QGraphicsItem]

items(self, path: QPainterPath, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape, order: Qt.SortOrder = Qt.DescendingOrder, deviceTransform: QTransform = QTransform()) → List[QGraphicsItem]

items(self, x: float, y: float, w: float, h: float, mode: Qt.ItemSelectionMode, order: Qt.SortOrder, deviceTransform: QTransform = QTransform()) → List[QGraphicsItem]

itemsBoundingRect(self) → QRectF

keyPressEvent(self, event: QKeyEvent)

keyReleaseEvent(self, event: QKeyEvent)

killTimer(self, id: int)

metaObject(self) → QMetaObject

minimumRenderSize(self) → float

mouseDoubleClickEvent(self, event: QGraphicsSceneMouseEvent)

mouseGrabberItem(self) → QGraphicsItem

mouseMoveEvent(self, event: QGraphicsSceneMouseEvent)

mousePressEvent(self, event: QGraphicsSceneMouseEvent)

mouseReleaseEvent(self, event: QGraphicsSceneMouseEvent)

moveToThread(self, thread: QThread)

objectName(self) → str

objectNameChanged

objectNameChanged(self, objectName: str) [signal]

palette(self) → QPalette

parent(self) → QObject

property(self, name: str) → Any

pyqtConfigure(...)

Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

receivers(self, signal: PYQT_SIGNAL) → int

removeEventFilter(self, a0: QObject)

removeItem(self, item: QGraphicsItem)

render(self, painter: QPainter, target: QRectF = QRectF(), source: QRectF = QRectF(), mode: Qt.AspectRatioMode = Qt.KeepAspectRatio)

sceneRect(self) → QRectF

sceneRectChanged

sceneRectChanged(self, rect: QRectF) [signal]

selectedItems(self) → List[QGraphicsItem]

selectionArea(self) → QPainterPath

selectionChanged

selectionChanged(self) [signal]

sendEvent(self, item: QGraphicsItem, event: QEvent) → bool

sender(self) → QObject

senderSignalIndex(self) → int

setActivePanel(self, item: QGraphicsItem)

setActiveWindow(self, widget: QGraphicsWidget)

setBackgroundBrush(self, brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient])

setBspTreeDepth(self, depth: int)

setFocus(self, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusItem(self, item: QGraphicsItem, focusReason: Qt.FocusReason = Qt.OtherFocusReason)

setFocusOnTouch(self, enabled: bool)

setFont(self, font: QFont)

setForegroundBrush(self, brush: Union[QBrush, QColor, Qt.GlobalColor, int, QGradient])

setItemIndexMethod(self, method: QGraphicsScene.ItemIndexMethod)

setMinimumRenderSize(self, minSize: float)

setObjectName(self, name: str)

setPalette(self, palette: QPalette)

setParent(self, a0: QObject)

setProperty(self, name: str, value: Any) → bool

setSceneRect(self, rect: QRectF)

setSceneRect(self, x: float, y: float, w: float, h: float) → None

setSelectionArea(self, path: QPainterPath, deviceTransform: QTransform)

setSelectionArea(self, path: QPainterPath, selectionOperation: Qt.ItemSelectionOperation = Qt.ReplaceSelection, mode: Qt.ItemSelectionMode = Qt.IntersectsItemShape, deviceTransform: QTransform = QTransform()) → None

setStickyFocus(self, enabled: bool)

setStyle(self, style: QStyle)

signalsBlocked(self) → bool

startTimer(self, interval: int, timerType: Qt.TimerType = Qt.CoarseTimer) → int

staticMetaObject = <PyQt6.QtCore.QMetaObject object>

stickyFocus(self) → bool

style(self) → QStyle

thread(self) → QThread

timerEvent(self, a0: QTimerEvent)

tr(sourceText: str, disambiguation: typing.Optional[str] = None, n: int = - 1) → str

update(self, rect: QRectF = QRectF())

update(self, x: float, y: float, w: float, h: float) → None

views(self) → List[QGraphicsView]

wheelEvent(self, event: QGraphicsSceneWheelEvent)

width(self) → float

class schrodinger.protein.helm.helm_renderer.HelmWidget(helm_mol: Optional[rdkit.Chem.rdchem.Mol] = None, fallback_entity: Optional[schrodinger.livedesign.entity_type.EntityClass] = None, *args, **kwargs)

Bases: PyQt6.QtWidgets.QWidget

A widget which creates a visual representation of a coarse-grained 2D helm molecule

__init__(helm_mol: Optional[rdkit.Chem.rdchem.Mol] = None, fallback_entity: Optional[schrodinger.livedesign.entity_type.EntityClass] = None, *args, **kwargs)

layout(self) → QLayout

DrawChildren = 2

DrawWindowBackground = 1

IgnoreMask = 4

class PaintDeviceMetric(value)

Bases: enum.Enum

An enumeration.

PdmWidth = 1

PdmHeight = 2

PdmWidthMM = 3

PdmHeightMM = 4

PdmNumColors = 5

PdmDepth = 6

PdmDpiX = 7

PdmDpiY = 8

PdmPhysicalDpiX = 9

PdmPhysicalDpiY = 10

PdmDevicePixelRatio = 11

PdmDevicePixelRatioScaled = 12

PdmDepth = 6

PdmDevicePixelRatio = 11

PdmDevicePixelRatioScaled = 12

PdmDpiX = 7

PdmDpiY = 8

PdmHeight = 2

PdmHeightMM = 4

PdmNumColors = 5

PdmPhysicalDpiX = 9

PdmPhysicalDpiY = 10

PdmWidth = 1

PdmWidthMM = 3

class RenderFlag(value)

Bases: enum.Flag

An enumeration.

DrawWindowBackground = 1

DrawChildren = 2

IgnoreMask = 4

acceptDrops(self) → bool

accessibleDescription(self) → str

accessibleName(self) → str

actionEvent(self, a0: QActionEvent)

actions(self) → List[QAction]

activateWindow(self)

addAction(self, action: QAction)

addActions(self, actions: Iterable[QAction])

adjustSize(self)

autoFillBackground(self) → bool

backgroundRole(self) → QPalette.ColorRole

baseSize(self) → QSize

blockSignals(self, b: bool) → bool

changeEvent(self, a0: QEvent)

childAt(self, p: QPoint) → QWidget

childAt(self, ax: int, ay: int) → QWidget

childEvent(self, a0: QChildEvent)

children(self) → List[QObject]

childrenRect(self) → QRect

childrenRegion(self) → QRegion

clearFocus(self)

clearMask(self)

close(self) → bool

closeEvent(self, a0: QCloseEvent)

colorCount(self) → int

connectNotify(self, signal: QMetaMethod)

contentsMargins(self) → QMargins

contentsRect(self) → QRect

contextMenuEvent(self, a0: QContextMenuEvent)

contextMenuPolicy(self) → Qt.ContextMenuPolicy

create(self, window: PyQt6.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)

createWindowContainer(window: QWindow, parent: typing.Optional[QWidget] = None, flags: Qt.WindowType = Qt.WindowFlags()) → QWidget

cursor(self) → QCursor

customContextMenuRequested

customContextMenuRequested(self, pos: QPoint) [signal]

customEvent(self, a0: QEvent)

deleteLater(self)

depth(self) → int

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)

destroyed

destroyed(self, object: typing.Optional[QObject] = None) [signal]

devType(self) → int

devicePixelRatio(self) → float

devicePixelRatioF(self) → float

devicePixelRatioFScale() → float

disconnect(a0: QMetaObject.Connection) → bool

disconnect(self) → None

disconnectNotify(self, signal: QMetaMethod)

dragEnterEvent(self, a0: QDragEnterEvent)

dragLeaveEvent(self, a0: QDragLeaveEvent)

dragMoveEvent(self, a0: QDragMoveEvent)

dropEvent(self, a0: QDropEvent)

dumpObjectInfo(self)

dumpObjectTree(self)

dynamicPropertyNames(self) → List[QByteArray]

effectiveWinId(self) → PyQt6.sip.voidptr

ensurePolished(self)

enterEvent(self, event: QEnterEvent)

event(self, a0: QEvent) → bool

eventFilter(self, a0: QObject, a1: QEvent) → bool

find(a0: PyQt6.sip.voidptr) → QWidget

findChild(self, type: type, name: str = '', options: Qt.FindChildOption = Qt.FindChildrenRecursively) → QObject

findChild(self, types: Tuple, name: str = '', options: Qt.FindChildOption = Qt.FindChildrenRecursively) → QObject

findChildren(self, type: type, name: str = '', options: Qt.FindChildOption = Qt.FindChildrenRecursively) → List[QObject]

findChildren(self, types: Tuple, name: str = '', options: Qt.FindChildOption = Qt.FindChildrenRecursively) → List[QObject]

findChildren(self, type: type, re: QRegularExpression, options: Qt.FindChildOption = Qt.FindChildrenRecursively) → List[QObject]

findChildren(self, types: Tuple, re: QRegularExpression, options: Qt.FindChildOption = Qt.FindChildrenRecursively) → List[QObject]

focusInEvent(self, a0: QFocusEvent)

focusNextChild(self) → bool

focusNextPrevChild(self, next: bool) → bool

focusOutEvent(self, a0: QFocusEvent)

focusPolicy(self) → Qt.FocusPolicy

focusPreviousChild(self) → bool

focusProxy(self) → QWidget

focusWidget(self) → QWidget

font(self) → QFont

fontInfo(self) → QFontInfo

fontMetrics(self) → QFontMetrics

foregroundRole(self) → QPalette.ColorRole

frameGeometry(self) → QRect

frameSize(self) → QSize

geometry(self) → QRect

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap

grabGesture(self, type: Qt.GestureType, flags: Qt.GestureFlag = Qt.GestureFlags())

grabKeyboard(self)

grabMouse(self)

grabMouse(self, a0: Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, key: Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int

graphicsEffect(self) → QGraphicsEffect

graphicsProxyWidget(self) → QGraphicsProxyWidget

hasFocus(self) → bool

hasHeightForWidth(self) → bool

hasMouseTracking(self) → bool

hasTabletTracking(self) → bool

height(self) → int

heightForWidth(self, a0: int) → int

heightMM(self) → int

hide(self)

hideEvent(self, a0: QHideEvent)

inherits(self, classname: str) → bool

initPainter(self, painter: QPainter)

inputMethodEvent(self, a0: QInputMethodEvent)

inputMethodHints(self) → Qt.InputMethodHint

inputMethodQuery(self, a0: Qt.InputMethodQuery) → Any

insertAction(self, before: QAction, action: QAction)

insertActions(self, before: QAction, actions: Iterable[QAction])

installEventFilter(self, a0: QObject)

isActiveWindow(self) → bool

isAncestorOf(self, child: QWidget) → bool

isEnabled(self) → bool

isEnabledTo(self, a0: QWidget) → bool

isFullScreen(self) → bool

isHidden(self) → bool

isLeftToRight(self) → bool

isMaximized(self) → bool

isMinimized(self) → bool

isModal(self) → bool

isRightToLeft(self) → bool

isSignalConnected(self, signal: QMetaMethod) → bool

isVisible(self) → bool

isVisibleTo(self, a0: QWidget) → bool

isWidgetType(self) → bool

isWindow(self) → bool

isWindowModified(self) → bool

isWindowType(self) → bool

keyPressEvent(self, a0: QKeyEvent)

keyReleaseEvent(self, a0: QKeyEvent)

keyboardGrabber() → QWidget

killTimer(self, id: int)

layoutDirection(self) → Qt.LayoutDirection

leaveEvent(self, a0: QEvent)

locale(self) → QLocale

logicalDpiX(self) → int

logicalDpiY(self) → int

lower(self)

mapFrom(self, a0: QWidget, a1: QPoint) → QPoint

mapFrom(self, a0: QWidget, a1: QPointF) → QPointF

mapFromGlobal(self, a0: QPoint) → QPoint

mapFromGlobal(self, a0: QPointF) → QPointF

mapFromParent(self, a0: QPoint) → QPoint

mapFromParent(self, a0: QPointF) → QPointF

mapTo(self, a0: QWidget, a1: QPoint) → QPoint

mapTo(self, a0: QWidget, a1: QPointF) → QPointF

mapToGlobal(self, a0: QPoint) → QPoint

mapToGlobal(self, a0: QPointF) → QPointF

mapToParent(self, a0: QPoint) → QPoint

mapToParent(self, a0: QPointF) → QPointF

mask(self) → QRegion

maximumHeight(self) → int

maximumSize(self) → QSize

maximumWidth(self) → int

metaObject(self) → QMetaObject

metric(self, a0: QPaintDevice.PaintDeviceMetric) → int

minimumHeight(self) → int

minimumSize(self) → QSize

minimumSizeHint(self) → QSize

minimumWidth(self) → int

mouseDoubleClickEvent(self, a0: QMouseEvent)

mouseGrabber() → QWidget

mouseMoveEvent(self, a0: QMouseEvent)

mousePressEvent(self, a0: QMouseEvent)

mouseReleaseEvent(self, a0: QMouseEvent)

move(self, a0: QPoint)

move(self, ax: int, ay: int) → None

moveEvent(self, a0: QMoveEvent)

moveToThread(self, thread: QThread)

nativeEvent(self, eventType: QByteArray, message: PyQt6.sip.voidptr) → Tuple[bool, PyQt6.sip.voidptr]

nativeParentWidget(self) → QWidget

nextInFocusChain(self) → QWidget

normalGeometry(self) → QRect

objectName(self) → str

objectNameChanged

objectNameChanged(self, objectName: str) [signal]

overrideWindowFlags(self, type: Qt.WindowType)

overrideWindowState(self, state: Qt.WindowState)

paintEngine(self) → QPaintEngine

paintEvent(self, a0: QPaintEvent)

paintingActive(self) → bool

palette(self) → QPalette

parent(self) → QObject

parentWidget(self) → QWidget

physicalDpiX(self) → int

physicalDpiY(self) → int

pos(self) → QPoint

previousInFocusChain(self) → QWidget

property(self, name: str) → Any

pyqtConfigure(...)

Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

raise_(self)

receivers(self, signal: PYQT_SIGNAL) → int

rect(self) → QRect

releaseKeyboard(self)

releaseMouse(self)

releaseShortcut(self, id: int)

removeAction(self, action: QAction)

removeEventFilter(self, a0: QObject)

render(self, target: QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: QWidget.RenderFlag = QWidget.RenderFlags(QWidget.DrawWindowBackground | QWidget.DrawChildren))

render(self, painter: QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: QWidget.RenderFlag = QWidget.RenderFlags(QWidget.DrawWindowBackground | QWidget.DrawChildren)) → None

repaint(self)

repaint(self, x: int, y: int, w: int, h: int) → None

repaint(self, a0: QRect) → None

repaint(self, a0: QRegion) → None

resize(self, a0: QSize)

resize(self, w: int, h: int) → None

resizeEvent(self, a0: QResizeEvent)

restoreGeometry(self, geometry: QByteArray) → bool

saveGeometry(self) → QByteArray

screen(self) → QScreen

scroll(self, dx: int, dy: int)

scroll(self, dx: int, dy: int, a2: QRect) → None

sender(self) → QObject

senderSignalIndex(self) → int

setAcceptDrops(self, on: bool)

setAccessibleDescription(self, description: str)

setAccessibleName(self, name: str)

setAttribute(self, attribute: Qt.WidgetAttribute, on: bool = True)

setAutoFillBackground(self, enabled: bool)

setBackgroundRole(self, a0: QPalette.ColorRole)

setBaseSize(self, basew: int, baseh: int)

setBaseSize(self, s: QSize) → None

setContentsMargins(self, left: int, top: int, right: int, bottom: int)

setContentsMargins(self, margins: QMargins) → None

setContextMenuPolicy(self, policy: Qt.ContextMenuPolicy)

setCursor(self, a0: Union[QCursor, Qt.CursorShape])

setDisabled(self, a0: bool)

setEnabled(self, a0: bool)

setFixedHeight(self, h: int)

setFixedSize(self, a0: QSize)

setFixedSize(self, w: int, h: int) → None

setFixedWidth(self, w: int)

setFocus(self)

setFocus(self, reason: Qt.FocusReason) → None

setFocusPolicy(self, policy: Qt.FocusPolicy)

setFocusProxy(self, a0: QWidget)

setFont(self, a0: QFont)

setForegroundRole(self, a0: QPalette.ColorRole)

setGeometry(self, a0: QRect)

setGeometry(self, ax: int, ay: int, aw: int, ah: int) → None

setGraphicsEffect(self, effect: QGraphicsEffect)

setHidden(self, hidden: bool)

setInputMethodHints(self, hints: Qt.InputMethodHint)

setLayout(self, a0: QLayout)

setLayoutDirection(self, direction: Qt.LayoutDirection)

setLocale(self, locale: QLocale)

setMask(self, a0: QBitmap)

setMask(self, a0: QRegion) → None

setMaximumHeight(self, maxh: int)

setMaximumSize(self, maxw: int, maxh: int)

setMaximumSize(self, s: QSize) → None

setMaximumWidth(self, maxw: int)

setMinimumHeight(self, minh: int)

setMinimumSize(self, minw: int, minh: int)

setMinimumSize(self, s: QSize) → None

setMinimumWidth(self, minw: int)

setMouseTracking(self, enable: bool)

setObjectName(self, name: str)

setPalette(self, a0: QPalette)

setParent(self, parent: QWidget)

setParent(self, parent: QWidget, f: Qt.WindowType) → None

setProperty(self, name: str, value: Any) → bool

setScreen(self, a0: QScreen)

setShortcutAutoRepeat(self, id: int, enabled: bool = True)

setShortcutEnabled(self, id: int, enabled: bool = True)

setSizeIncrement(self, w: int, h: int)

setSizeIncrement(self, s: QSize) → None

setSizePolicy(self, a0: QSizePolicy)

setSizePolicy(self, hor: QSizePolicy.Policy, ver: QSizePolicy.Policy) → None

setStatusTip(self, a0: str)

setStyle(self, a0: QStyle)

setStyleSheet(self, styleSheet: str)

setTabOrder(a0: QWidget, a1: QWidget)

setTabletTracking(self, enable: bool)

setToolTip(self, a0: str)

setToolTipDuration(self, msec: int)

setUpdatesEnabled(self, enable: bool)

setViewSize(size)

Set view size to requested width and height and rescale to show the entire scene :param size: the requested size in pixels

setVisible(self, visible: bool)

setWhatsThis(self, a0: str)

setWindowFilePath(self, filePath: str)

setWindowFlag(self, a0: Qt.WindowType, on: bool = True)

setWindowFlags(self, type: Qt.WindowType)

setWindowIcon(self, icon: QIcon)

setWindowIconText(self, a0: str)

setWindowModality(self, windowModality: Qt.WindowModality)

setWindowModified(self, a0: bool)

setWindowOpacity(self, level: float)

setWindowRole(self, a0: str)

setWindowState(self, state: Qt.WindowState)

setWindowTitle(self, a0: str)

sharedPainter(self) → QPainter

show(self)

showEvent(self, a0: QShowEvent)

showFullScreen(self)

showMaximized(self)

showMinimized(self)

showNormal(self)

signalsBlocked(self) → bool

size(self) → QSize

sizeHint(self) → QSize

sizeIncrement(self) → QSize

sizePolicy(self) → QSizePolicy

stackUnder(self, a0: QWidget)

startTimer(self, interval: int, timerType: Qt.TimerType = Qt.CoarseTimer) → int

staticMetaObject = <PyQt6.QtCore.QMetaObject object>

statusTip(self) → str

style(self) → QStyle

styleSheet(self) → str

tabletEvent(self, a0: QTabletEvent)

testAttribute(self, attribute: Qt.WidgetAttribute) → bool

thread(self) → QThread

timerEvent(self, a0: QTimerEvent)

toolTip(self) → str

toolTipDuration(self) → int

tr(sourceText: str, disambiguation: typing.Optional[str] = None, n: int = - 1) → str

underMouse(self) → bool

ungrabGesture(self, type: Qt.GestureType)

unsetCursor(self)

unsetLayoutDirection(self)

unsetLocale(self)

update(self)

update(self, a0: QRect) → None

update(self, a0: QRegion) → None

update(self, ax: int, ay: int, aw: int, ah: int) → None

updateGeometry(self)

updateMicroFocus(self, query: Qt.InputMethodQuery = Qt.ImQueryAll)

updatesEnabled(self) → bool

visibleRegion(self) → QRegion

whatsThis(self) → str

wheelEvent(self, a0: QWheelEvent)

width(self) → int

widthMM(self) → int

winId(self) → PyQt6.sip.voidptr

window(self) → QWidget

windowFilePath(self) → str

windowFlags(self) → Qt.WindowType

windowHandle(self) → QWindow

windowIcon(self) → QIcon

windowIconChanged

windowIconChanged(self, icon: QIcon) [signal]

windowIconText(self) → str

windowIconTextChanged

windowIconTextChanged(self, iconText: str) [signal]

windowModality(self) → Qt.WindowModality

windowOpacity(self) → float

windowRole(self) → str

windowState(self) → Qt.WindowState

windowTitle(self) → str

windowTitleChanged

windowTitleChanged(self, title: str) [signal]

windowType(self) → Qt.WindowType

x(self) → int

y(self) → int

getScaleFactor(size: PyQt6.QtCore.QSizeF) → float

Get the scaling factor to make a view of the requested width and height

fit the scene

Parameters

size – width and height of the view

Returns

Factor by which to rescale the view