schrodinger.application.bioluminate.patch_utils.pre_analyze module

Run pre-analysis on the specified structure. Invoked as: <basename>

The structure will be read from <basename>.maegz and the ASL to use for the surface will be read from <basename>.txt. Output will be written to <basename>.vis and <basename>.pkl.


Return a JobSpecification necessary to run this script via launchapi.

If this function is present in a script, it allows the script to run under job control via the -HOST flag on either localhost or remote host. The script will run locally without jobcontrol if -HOST is not used.


argv (list) – The list of command line arguments including the script name at [0], similar to that returned by sys.argv

Return type



The JobSpecification for this job