schrodinger.application.bioluminate.anarci.annotate module

schrodinger.application.bioluminate.anarci.annotate.read_fasta(filename: str) → list[InputSequence]

schrodinger.application.bioluminate.anarci.annotate.get_anarci_results_from_fasta(filename: str, **kwargs)

schrodinger.application.bioluminate.anarci.annotate.get_annotations(results: AnarciResults) → tuple[str, list[ProteinSequence]]

schrodinger.application.bioluminate.anarci.annotate.show_msv_annotation(annotated_domains: list[ProteinSequence], ig_type_str: str)

Show an MSV window with the given annotated domains

Parameters

• annotated_domains – the MSV-annotated domain objects to show

• ig_type_str – the type of immunoglobulin to show (TCR or Antibody)

schrodinger.application.bioluminate.anarci.annotate.write_annotated_fasta(out_filename: str, ig_type_str: str, dom_annotations: list[ProteinSequence])

schrodinger.application.bioluminate.anarci.annotate.get_out_filename(filename: str) → str

Get the output filename for the given input filename

schrodinger.application.bioluminate.anarci.annotate.parse_args(args)

schrodinger.application.bioluminate.anarci.annotate.main()