schrodinger.ui.sequencealignment.constants module

This module includes various global definitions used by the multiple sequence viewer, as well as several helper functions.

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Data sets references:

Larkin,M.A., Blackshields, G., Brown, N.P., Chenna, R., McGettigan, P.A., McWilliam, H., Valentin, F., Wallace, I.M., Wilm, A., Lopez, R., Thompson, J.D., Gibson, T.J., Higgins, D.G. (2007) Clustal W and Clustal X version 2.0. Bioinformatics, 23:2947-2948.

Hopp, T.P. and Woods, K.R. (1983) A computer program for predicting protein antigenic determinants. Mol. Immunol., 20(4):483-489.

Kyte, J. and Doolittle, R.F. (1982) A simple method for displaying the hydropathic character of a protein. J. Mol. Biol., 157(1):105-132.

Taylor, W.R. (1997) Residual colours: a proposal for aminochromography. Protein Eng., 10(7):743-746.