Builder panel

The Builder panel (currently in beta) allows you to easily build structures from various elements like atoms, fragments, rings, amino acids, etc. You can also assign charge, secondary structure, etc.

Open the Builder panel by clicking the "Builder" button in the Panel Toolbar.

Building can be done with chemicals, proteins, or nucleic acids.

Chemical

The builder panel opens the Chemical selected by default. There are options for building various aspects onto the structure in the workspace, including atoms, charge, residue, bonds and the model.

Protein

Once selecting Protein, you will presented options for building proteins onto the structure in the workspace.

Secondary Structure Option Menu

Choose between Alpha Helix, Beta Sheet (Anti-Parallel), and Beta Sheet (Parallel).

Nucleic Acid

Once selecting Protein, you will presented options for building proteins onto the structure in the workspace.

Secondary Structure Option Menu

Choose between Alpha Helix, Beta Sheet (Anti-Parallel), and Beta Sheet (Parallel).

Atom Options

Select an atom in the workspace to perform various options including Fix H (Fix Hydrogen), Add H (Add Hydrogen), Invert, Delete, or Clear.

Charge Option

Select an atom in the workspace to set the charge by +1, 0, or -1.

Residue Option

Select this option to remove the residue.

Bond Options

Select a bond in the workspace to perform various options including: Create (Create a bond), Delete (Delete a bond), or to set as Cycle, I (single), II (double), III (triple), and Arom (aromatic).

Model Options

Select actions for the Model in the workspace: Clean, Sculpt, Fix, or  Restore.

El-stat Option

Select this option for El-stat.

Bumps Option

Select this option for bumps.